PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678437184
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 553aa    MW: 61821.1 Da    PI: 6.844
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678437184genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16326373148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEd++l  +++ +G g+W++ ++  g+ R++k+c++rw +yl
        678437184 326 RGAWTKEEDQRLTSYIRVHGEGNWRSLPKAAGLLRCGKSCRLRWINYL 373
                      89******************************99************97 PP
2Myb_DNA-binding48.42.1e-15379424148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E + +++++++lG++ W++Ia +++ gRt++++k++w+++l
        678437184 379 RGNFSEQEVDVIIKLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 424
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089712.401205262IPR006595CTLH, C-terminal LisH motif
SMARTSM006681.0E-10205262IPR006595CTLH, C-terminal LisH motif
PfamPF106079.3E-10209275IPR024964CTLH/CRA C-terminal to LisH motif domain
Gene3DG3DSA:1.10.10.604.0E-22317376IPR009057Homeodomain-like
PROSITE profilePS5129415.198321373IPR017930Myb domain
SuperFamilySSF466891.09E-27325420IPR009057Homeodomain-like
SMARTSM007179.2E-13325375IPR001005SANT/Myb domain
PfamPF002492.0E-14326373IPR001005SANT/Myb domain
CDDcd001672.69E-10328373No hitNo description
PROSITE profilePS5129426.053374428IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-25377429IPR009057Homeodomain-like
SMARTSM007177.8E-16378426IPR001005SANT/Myb domain
PfamPF002496.7E-14379424IPR001005SANT/Myb domain
CDDcd001673.63E-11381424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAAASASASP VDVIGRYFLD IWSHTSTAVF LNPDAPLNSL INDEYDLEDV PTELDPMRVE  60
ERFATIGPDR LSIVYRDSDS NAGQVGAAQG NHPAPTQCIV YYFEMFVKNA GQEGNITIGF  120
APSDARLRIH PGKNGFIVSR VRNEVMRKLF PTVAVASSGE EVVQYYFQHC GYEETAMLFN  180
NAFRKDLYLA SLIPDDSVDH YTSYALHVRK TLRQMISSGE IDESLAILSQ QQHIDEDSTS  240
TIRFLLHCQK FIELIRQSKL EEAVAYFSSE FCKFKYPPGA EELLKLRERC RCTIDLDRPP  300
APPTVERGRD WMMGRSPCCE KGHTNRGAWT KEEDQRLTSY IRVHGEGNWR SLPKAAGLLR  360
CGKSCRLRWI NYLRPDLKRG NFSEQEVDVI IKLHNLLGNR WSLIAGRLPG RTDNEIKNYW  420
NTHLKRKLVN GGGGGVDPQT HRPLVASNAS MDSGDSNPQT PKPYLPETNI NCSPHSPPVD  480
IRLGDSSPHP LLDLELSIGL PPPAPMSEKP KPIYDPFNGA PAAPDTCLCC RLDVPVGRLC  540
VHCHSSNALS TRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-273264287108B-MYB
1h8a_C2e-2732542826128MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678437184
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-79myb domain protein 4