PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678436775
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 161aa    MW: 16984.1 Da    PI: 10.22
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678436775genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-183871134
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
               C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk+
  678436775 38 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKR 71
               ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-133283IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-123571No hitNo description
Gene3DG3DSA:3.30.50.101.2E-153771IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.16E-123786No hitNo description
PfamPF003201.8E-163871IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.1763868IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403863IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDLSDNGSEW EEEMSSGGRS PSPGRIPSDG LGSTIKTCVD CGTSKTPLWR GGPAGPKSLC  60
NACGIRSRKK RRGLAGVTKE EKKCKKPLAS SLKGGHQSSN SSSSIQSSTS SSAESAFRSW  120
AFGGDVALQR PRSNIARRRK LGEEEQAAFL LLTLSCGSVY A
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678436775
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100810.14e-56GATA transcription factor 15-like
SwissprotQ9FJ107e-30GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A4D9A7J83e-56A0A4D9A7J8_SALSN; Uncharacterized protein
STRINGMigut.G00106.1.p1e-50(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-30GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]