PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678436278

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 668aa MW: 74450.9 Da PI: 6.1859

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678436278	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.2e-13	167	210	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +E++RR +N++f L +l+P++ +K++ a+iL A++YI++Lq 678436278 167 SNEKQRRVSMNDKFKDLSKLIPNP-----TKNDQATILADAIDYINELQ 210 58********************.....9****************9 PP
2	HLH	36.8	6.9e-12	479	522	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR r+N++fe Lr+l+P++ +K + a+++ A++YI +L 678436278 479 FVTERHRRVRLNDKFEALRKLVPNP-----TKSDRASTVGNAIDYIDEL 522 568********************.....9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-13	153	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.005	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.4E-12	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-14	167	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-10	167	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.35E-11	169	214	No hit	No description
PROSITE profile	PS50888	14.221	473	522	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-11	479	528	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-13	479	540	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-12	480	534	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-9	480	522	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.99E-9	482	526	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0048658	Biological Process	anther wall tapetum development
GO:0052543	Biological Process	callose deposition in cell wall
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MLKETSAAAA ASALEMEAFN VGNASFHESN QMSTGFDAEN HYLFLQHHSI AAAPPDLLPP 60 TCSIPFSNSP LNYSSFLGHF SPPESHTDDP GNVGYDSLLS LNQPSSLREP FPCGGEPKVE 120 SLFGFLDGSV GAGALYPSQN FEFFEFTAGE TGSPCHMKDG KVTKCSSNEK QRRVSMNDKF 180 KDLSKLIPNP TKNDQATILA DAIDYINELQ RTVAELKLLA EKKRSAKEKR IKSPKIETDD 240 VRQEDGRAMR TSWLQRKSKN TEIDVRIIDD EVTVKLVQQR AINSLVYVSK VLDELHLDLH 300 HVAGGVIGGT VPFFMEENAF SHTSLSQQDA TLEMELQQGF NVGDDQFFNV ANENEVQQAA 360 NDFHLQRTSG FDCETMYLQY HTSAFSVHPQ RLLTELPYSS VNFLNSAQNS PSLLASLTTG 420 SIVNDHPTLN QPPPQPPFLR DMFHSLPSTG LVVRSPRNGS LFENGVFEFT GVGKSTKPFV 480 TERHRRVRLN DKFEALRKLV PNPTKSDRAS TVGNAIDYID ELKRTVTELK VLVEKKRFTK 540 ERLKMLKSEE SNILGDVNKE NGSLRCSWLQ RKSKNTIIDV KIIDDEVTVK IVQQKRINCL 600 VFVSKVLHEL QLDLHHVAGG LIGDYYTFFF NSKVIYEVST VYASALANKL IEAVDQQSAA 660 ADPPPDSN

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MLKETSAAAA ASALEMEAFN VGNASFHESN QMSTGFDAEN HYLFLQHHSI AAAPPDLLPP  60
TCSIPFSNSP LNYSSFLGHF SPPESHTDDP GNVGYDSLLS LNQPSSLREP FPCGGEPKVE  120
SLFGFLDGSV GAGALYPSQN FEFFEFTAGE TGSPCHMKDG KVTKCSSNEK QRRVSMNDKF  180
KDLSKLIPNP TKNDQATILA DAIDYINELQ RTVAELKLLA EKKRSAKEKR IKSPKIETDD  240
VRQEDGRAMR TSWLQRKSKN TEIDVRIIDD EVTVKLVQQR AINSLVYVSK VLDELHLDLH  300
HVAGGVIGGT VPFFMEENAF SHTSLSQQDA TLEMELQQGF NVGDDQFFNV ANENEVQQAA  360
NDFHLQRTSG FDCETMYLQY HTSAFSVHPQ RLLTELPYSS VNFLNSAQNS PSLLASLTTG  420
SIVNDHPTLN QPPPQPPFLR DMFHSLPSTG LVVRSPRNGS LFENGVFEFT GVGKSTKPFV  480
TERHRRVRLN DKFEALRKLV PNPTKSDRAS TVGNAIDYID ELKRTVTELK VLVEKKRFTK  540
ERLKMLKSEE SNILGDVNKE NGSLRCSWLQ RKSKNTIIDV KIIDDEVTVK IVQQKRINCL  600
VFVSKVLHEL QLDLHHVAGG LIGDYYTFFF NSKVIYEVST VYASALANKL IEAVDQQSAA  660
ADPPPDSN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678436278

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093423.1	1e-101	transcription factor bHLH91-like
Swissprot	Q8GX46	1e-67	BH091_ARATH; Transcription factor bHLH91
TrEMBL	A0A2Z7BHZ1	6e-88	A0A2Z7BHZ1_9LAMI; Uncharacterized protein
STRING	Migut.N01685.1.p	8e-88	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-68	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]