PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678435968
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 157aa    MW: 17429.4 Da    PI: 7.2143
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678435968genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.7e-19756255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  678435968  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 56
               69******9.**********8.....334**********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.91E-33665No hitNo description
SMARTSM003804.0E-40770IPR001471AP2/ERF domain
PfamPF008472.2E-11755IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-34765IPR001471AP2/ERF domain
PROSITE profilePS5103220.56764IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-20764IPR016177DNA-binding domain
PRINTSPR003672.4E-11819IPR001471AP2/ERF domain
PRINTSPR003672.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MARSHQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARIMCGPRAR  60
TNFTNESASS GKHLLSANLM AKLHKCHLAS LQLAQKSGEP SPSKSAVVNV DDASSSSYQN  120
EEQMSPLDDD QIEQMIQELL HYGSIELSSS SSSAVGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16863662ATERF1
3gcc_A1e-16863662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678435968
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377674.16e-65ethylene-responsive transcription factor ERF003
RefseqXP_018822290.17e-65PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-59ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLS8BTJ51e-67S8BTJ5_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_008377674.12e-64(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-48ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]