PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678435166
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 500aa    MW: 54699.1 Da    PI: 8.8159
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678435166genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056385123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  678435166 63 FVCEICNKGFQRDQNLQLHRRGH 85
               89*******************88 PP
2zf-C2H211.20.0011140162123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k +  +s+ k H + +
  678435166 140 WKCDKCSKKYAVQSDWKAHSKIC 162
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-76285No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.0E-56385IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355110105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.45E-7135160No hitNo description
SMARTSM00355150140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSGHRDAFPN SSAPSGLQST AARPQDAAPN AGSKRKRSLP GTPDPEAEVV ALSPRSLMAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKEQI RKKVYICPEK TCVHHDPARA  120
LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VQSDWKAHSK ICGTREYKCD CGTLFSRQAT  180
LCFILFYFFV FFSCQSTMLI LFSFMGLDDC LYVCVALIEN LGNSSVLWIR KDSFITHRAF  240
CDALAEESAR FPAAAAPVNL SFKTDFLNSG SQFPGQEMES GKTRIPVWLD SCSGVSFYSQ  300
SPDLVQLATA AAAGSQNQWM ETPPFGGMMN MPVNMSSMSY ASPNMGAPMK EEDGNTTSKG  360
GNFSEAISSM FFCNNQGEPA AQQPLPMSAT ALLQKAAQMG SSTRSTNSLL FGSTFSSSNN  420
NNNNAAGMNM MAVPSSSSDS STLLLRESVL GETMGLTRDF LGVGGNNQMQ NRPFLPESEL  480
AKFAAAANSL DMGRFRSGSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-26136253367Zinc finger protein JACKDAW
5b3h_F7e-26136253367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189102KLKQRSNKEQIRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678435166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089318.11e-139protein indeterminate-domain 9
TrEMBLA0A4D9ARF51e-137A0A4D9ARF5_SALSN; Uncharacterized protein
STRINGXP_009771226.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.18e-87C2H2-like zinc finger protein