PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678434756

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Nin-like

Protein Properties

Length: 926aa MW: 101435 Da PI: 6.3886

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678434756	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.3	1.5e-28	566	616	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++sl++l++yFs+++kdAAk++gvc+T+LKriCR+yGI+RWP+Rki+++ 678434756 566 DKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICREYGIARWPSRKINKV 616 6899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.62	551	636	IPR003035	RWP-RK domain
Pfam	PF02042	4.7E-25	569	616	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	8.0E-21	826	909	No hit	No description
SuperFamily	SSF54277	1.86E-18	826	911	No hit	No description
PROSITE profile	PS51745	20.872	830	912	IPR000270	PB1 domain
SMART	SM00666	1.8E-17	830	912	IPR000270	PB1 domain
Pfam	PF00564	1.5E-15	831	909	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MEYPGKERMN DQLTEIDGGS KHAVVMGSSY LHDTFSSTAE LMNLDTNAGF CSGSVDMSDF 60 SSPFFMMSPL DAVSMSFSPS FGASGITTDN GDVLGATLHC GEKLVLHDTD SHLPLATESA 120 NNEFEFVENF RSSHCNVPDY MGKTFISRPL KRSLAEKLLA ALHLFNEESG GGVLAQVWLP 180 LKKGDQYILS TCEQPYLLDQ TFFEYREISR SFTFSAESKP GSFPGLPGRV FLSKIPEWTS 240 NVLYYNKAEY LRVQYAAAYE VRGSIALPIL EVDSADTSCC AVLELVTRKE KSNFDPEIET 300 LCHALQNLSK GQRAALSDIA DVLRTVCHVH RLPLALTWMP CICTEEPGNE IIKIQPRGSH 360 NGSSGKHVLC VEDTASYVND KNMKGFLQTC LGHYLEEGKG VVGKALKSAH PFFYPDVKEY 420 HISEYPLVHH ARKFGLNAAV AIRLRSTHTE DDDYILEFFL PVTVTDGAEQ QLLLNNLSTT 480 MQRICTTLRT VSDTELLQSS ISMVQSPVDH EGITLGGNSS HMVVSGKMNH RHCSSGLPTL 540 GVQEARPSRQ GTGPVKQMGK KRSTADKHVS LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC 600 REYGIARWPS RKINKVNRSL RKLQGVLDSV HVQGGLKLNS SMGILSTASL VQGSNSGMSA 660 MLSNGASLMG ESDSMFEDGK SASIPANLDV ENTVVREGET CLQSTGECVG AHVMGANHSW 720 IPKPSPVQWM PSAVPHVSTS VEASNGWAQN NSSSNPNPPA LPPLISQNLN SVLVDEHLHA 780 KSEDEGEGDQ QQVSSGSWNG SATILDGSSS SSRNFQRGHQ RTGAGDHGSR ITIKSSYKED 840 TVRFKFDPDL GCDHLYGMIA KRFQLQMGQF QLKYLDEEHE WILLVNHSDM RECLEVLNFQ 900 GARHLKIIVC DLGTSGASNW TPGNER

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MEYPGKERMN DQLTEIDGGS KHAVVMGSSY LHDTFSSTAE LMNLDTNAGF CSGSVDMSDF  60
SSPFFMMSPL DAVSMSFSPS FGASGITTDN GDVLGATLHC GEKLVLHDTD SHLPLATESA  120
NNEFEFVENF RSSHCNVPDY MGKTFISRPL KRSLAEKLLA ALHLFNEESG GGVLAQVWLP  180
LKKGDQYILS TCEQPYLLDQ TFFEYREISR SFTFSAESKP GSFPGLPGRV FLSKIPEWTS  240
NVLYYNKAEY LRVQYAAAYE VRGSIALPIL EVDSADTSCC AVLELVTRKE KSNFDPEIET  300
LCHALQNLSK GQRAALSDIA DVLRTVCHVH RLPLALTWMP CICTEEPGNE IIKIQPRGSH  360
NGSSGKHVLC VEDTASYVND KNMKGFLQTC LGHYLEEGKG VVGKALKSAH PFFYPDVKEY  420
HISEYPLVHH ARKFGLNAAV AIRLRSTHTE DDDYILEFFL PVTVTDGAEQ QLLLNNLSTT  480
MQRICTTLRT VSDTELLQSS ISMVQSPVDH EGITLGGNSS HMVVSGKMNH RHCSSGLPTL  540
GVQEARPSRQ GTGPVKQMGK KRSTADKHVS LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC  600
REYGIARWPS RKINKVNRSL RKLQGVLDSV HVQGGLKLNS SMGILSTASL VQGSNSGMSA  660
MLSNGASLMG ESDSMFEDGK SASIPANLDV ENTVVREGET CLQSTGECVG AHVMGANHSW  720
IPKPSPVQWM PSAVPHVSTS VEASNGWAQN NSSSNPNPPA LPPLISQNLN SVLVDEHLHA  780
KSEDEGEGDQ QQVSSGSWNG SATILDGSSS SSRNFQRGHQ RTGAGDHGSR ITIKSSYKED  840
TVRFKFDPDL GCDHLYGMIA KRFQLQMGQF QLKYLDEEHE WILLVNHSDM RECLEVLNFQ  900
GARHLKIIVC DLGTSGASNW TPGNER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678434756

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073897.1	0.0	protein NLP9
TrEMBL	A0A2G9GDZ0	0.0	A0A2G9GDZ0_9LAMI; Uncharacterized protein
STRING	Migut.N03106.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein