PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678433967 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17527.9 Da PI: 10.3461 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.7e-17 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r +k +g+WvAe+r+p +kr r++lg++ ++ Aa+a++ a+ +l+g 678433967 42 QYKGIRMRK-WGKWVAEVREP---NKRSRIWLGSYSSPVAAARAYDVAAYCLRG 91 7******99.*******9998...337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.19E-17 | 41 | 100 | No hit | No description |
Pfam | PF00847 | 3.5E-11 | 42 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-36 | 42 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.339 | 42 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-20 | 42 | 100 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-30 | 42 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-13 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-13 | 81 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MTHSADGFPS RQADGKSHTT KILHPLPPMA EPGEARRRSE KQYKGIRMRK WGKWVAEVRE 60 PNKRSRIWLG SYSSPVAAAR AYDVAAYCLR GSKAKLNFPE EVSAVAPEDL SAASIRKKAA 120 EVGVRVDSTL VAAAAVNTTR FNKEIDLNKE PQPEIHDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-16 | 41 | 104 | 4 | 68 | ATERF1 |
3gcc_A | 5e-16 | 41 | 104 | 4 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678433967 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840786.1 | 1e-51 | PREDICTED: ethylene-responsive transcription factor RAP2-10-like | ||||
Swissprot | Q9SNE1 | 1e-42 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A0A022R6S4 | 3e-50 | A0A022R6S4_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L00172.1.p | 4e-51 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 2e-37 | cooperatively regulated by ethylene and jasmonate 1 |
Publications ? help Back to Top | |||
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