PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678432977 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 16503.6 Da PI: 9.6893 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g 678432977 18 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 67 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.3E-33 | 18 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-21 | 18 | 77 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.931 | 18 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-30 | 19 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.01E-26 | 19 | 76 | No hit | No description |
Pfam | PF00847 | 6.8E-11 | 19 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 57 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010941 | Biological Process | regulation of cell death | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDGGEGGRSG CRRRSEKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST PVAAARAYDT 60 AVYYLRGPSA KLNFPDEISF GGLKDLSAAS IREKAAEVGA RVDALHTNKG LLLHHPNHDE 120 IDLNKNPEPE IEPDFTAPAS VPFSTTTPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 19 | 81 | 15 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00401 | DAP | Transfer from AT3G50260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678432977 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840786.1 | 3e-64 | PREDICTED: ethylene-responsive transcription factor RAP2-10-like | ||||
Swissprot | Q9SNE1 | 3e-48 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A0A2G9FXA4 | 6e-66 | A0A2G9FXA4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L00172.1.p | 1e-63 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 3e-49 | cooperatively regulated by ethylene and jasmonate 1 |
Publications ? help Back to Top | |||
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