PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678431744 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 243aa MW: 27082.6 Da PI: 7.8706 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.7 | 8.8e-34 | 13 | 141 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg........ 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++ak+ i+el+ ++ ++ s++ sa+++++g 678431744 13 FGRKDRHSKVCTVKGLRDRRVRLSVPTAIQIYDLQDRLGLSQPSKVVDWLMNAAKKDIDELPPLQIPPGSFMsqsliA----MLSAQSDKQGlkvsesnd 108 689*************************************************************99998777533331....222222222244556667 PP TCP 89 ..............kaaksaakskksqksaasal 108 ++ +s+++s+++q + as++ 678431744 109 gcwpcvsesrfglrQNVPSSHNSNSNQMN-ASHN 141 89999866666664222222222222222.2223 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-29 | 14 | 138 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.593 | 15 | 73 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MKDPRIVGAS RAFGRKDRHS KVCTVKGLRD RRVRLSVPTA IQIYDLQDRL GLSQPSKVVD 60 WLMNAAKKDI DELPPLQIPP GSFMSQSLIA MLSAQSDKQG LKVSESNDGC WPCVSESRFG 120 LRQNVPSSHN SNSNQMNASH NSFLKWDSSD LCLSHPPRSS IGEQISASIE GDWNHPSELL 180 QQPPLMYHNG MVTVTQPYLP LQRFDSESEA ARAIHLLDMT QINENAVQNK GQCFVHGGCN 240 EFK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-19 | 20 | 74 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-19 | 20 | 74 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678431744 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099021.1 | 7e-54 | transcription factor TCP5-like | ||||
Refseq | XP_011099023.1 | 7e-54 | transcription factor TCP5-like | ||||
TrEMBL | A0A1S3XAZ7 | 1e-49 | A0A1S3XAZ7_TOBAC; transcription factor TCP13-like | ||||
STRING | XP_009623901.1 | 2e-50 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60970.1 | 6e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |