PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678431367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 412aa MW: 44566.3 Da PI: 6.972 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.7 | 3e-36 | 34 | 140 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec..eaesssssasnss 86 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ + + +++c e+++++ 678431367 34 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAQLppwhplpqnvnfeQDEVQKKCeeEQQQQV------- 126 79**************************************************************88877765554432222244431111111....... PP TCP 87 sg............k 89 + + 678431367 127 -KlgvhhgepvisaA 140 .02222223355331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-33 | 34 | 143 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.033 | 36 | 94 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGESSNHRAA PPPSRLGPRS EIVEVQGGHV VRSTGRKDRH SKVCTAKGPR DRRVRLAAHT 60 AIQFYDVQDR LGYDRPSKAV DWLIKKAKTA IDELAQLPPW HPLPQNVNFE QDEVQKKCEE 120 EQQQQVKLGV HHGEPVISAA SSKRPMIMLG GDNELHNNPS SQNSGFLPSS FDSDAIADTM 180 KSFIPMGASA QASSSPMQFH RFPTSDLLSG NSGNSQDLRL SLQSFQDPIL LHHQAPEQPH 240 QQGQSLLGFD GTPNWLEHHP QAAAAAELSR FQRLIAWNPG GGDSNNGNGG AAAGFLFSSQ 300 QPTLQQLFGH AHFSSQRGPL QSSNTPSIRA WMDPSGVAAA IASSDPSPQQ QQHHQLLPTV 360 VPIYPSSMQG IGFASGAGGF AGFPIPTRIQ GDPEEHDGYS DKPSSVSSDS RH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 41 | 94 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 41 | 94 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00062 | PBM | Transfer from AT3G15030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678431367 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082737.1 | 0.0 | transcription factor TCP4-like | ||||
Refseq | XP_011082738.1 | 0.0 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-90 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2G9HTM9 | 1e-169 | A0A2G9HTM9_9LAMI; Uncharacterized protein | ||||
STRING | XP_009785152.1 | 1e-133 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3207 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-78 | TCP family protein |