PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678431360

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TCP

Protein Properties

Length: 525aa MW: 56892.9 Da PI: 6.8457

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678431360	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.7	1e-34	139	248	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsssg 88 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai+el+++ + +++++ce+e++++ +++++ + 678431360 139 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDELAQLppwhptsqnvnfeQDEAQKKCEEEQQQQPQQQQKLS 238 79**************************************************************666655555544333333444333333333333333 PP TCP 89 .........k 89 + 678431360 239 vhhgelmisS 248 4444444431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-31	139	253	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.979	141	199	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MPPSPPLSLG LLIAHTHTHS SSNCHLPLPD HLPEGSHAAP PVQLKAPISM AYMEVKLDPE 60 SNLHQGQNQF LTGEDGREPA SPPKKKASYF SPAVTTPEYA KLRQNMGESS NHHTAPPPSR 120 LGPRSEIVEV QGGHIVRSTG RKDRHSKVCT AKGPRDRRVR LAAHTAIQFY DVQDRLGYDR 180 PSKAVDWLIK KAKNAIDELA QLPPWHPTSQ NVNFEQDEAQ KKCEEEQQQQ PQQQQKLSVH 240 HGELMISSAS SKRPMMMLGG EDEMHNNPSS QNSSFLPSSL DSDAIADTIK SFFPMGASAE 300 ASSSSMQFQS FQASDLLSGN SGNSQDLRLS LQSFQDPMLL HRQPSEQAHQ QGQSLMGFDA 360 ASNWAEHHQQ AVAAAAAAAE LSRFQRLTAW NPGGGDSNNG NGGAAAGFLF NSQQPTLQQL 420 LGHTHFSSQR GPLQSSNTPS VRAWMDQSGV AAAIASSDPS QHQQQHHHLL PTVVPIYPSS 480 MQGIGFASGA GGFSGFPIPA RIHGDVEEHD GYSDKPSSVS SDSRH

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MPPSPPLSLG LLIAHTHTHS SSNCHLPLPD HLPEGSHAAP PVQLKAPISM AYMEVKLDPE  60
SNLHQGQNQF LTGEDGREPA SPPKKKASYF SPAVTTPEYA KLRQNMGESS NHHTAPPPSR  120
LGPRSEIVEV QGGHIVRSTG RKDRHSKVCT AKGPRDRRVR LAAHTAIQFY DVQDRLGYDR  180
PSKAVDWLIK KAKNAIDELA QLPPWHPTSQ NVNFEQDEAQ KKCEEEQQQQ PQQQQKLSVH  240
HGELMISSAS SKRPMMMLGG EDEMHNNPSS QNSSFLPSSL DSDAIADTIK SFFPMGASAE  300
ASSSSMQFQS FQASDLLSGN SGNSQDLRLS LQSFQDPMLL HRQPSEQAHQ QGQSLMGFDA  360
ASNWAEHHQQ AVAAAAAAAE LSRFQRLTAW NPGGGDSNNG NGGAAAGFLF NSQQPTLQQL  420
LGHTHFSSQR GPLQSSNTPS VRAWMDQSGV AAAIASSDPS QHQQQHHHLL PTVVPIYPSS  480
MQGIGFASGA GGFSGFPIPA RIHGDVEEHD GYSDKPSSVS SDSRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-20	146	199	1	54	Putative transcription factor PCF6
5zkt_B	6e-20	146	199	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18816164, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678431360

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:18816164}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082737.1	0.0	transcription factor TCP4-like
Refseq	XP_011082738.1	0.0	transcription factor TCP4-like
Swissprot	Q8LPR5	6e-91	TCP4_ARATH; Transcription factor TCP4
TrEMBL	A0A2G9HTM9	1e-171	A0A2G9HTM9_9LAMI; Uncharacterized protein
STRING	XP_009785152.1	1e-138	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3207	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	2e-49	TCP family protein

Publications ? help Back to Top
Schommer C, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] Ju Y, et al. Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] Challa KR,Aggarwal P,Nath U Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] Sun X, et al. Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] Kubota A, et al. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Challa KR,Rath M,Nath U The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]