PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678431200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24764.5 Da PI: 9.4534 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81 | 7.7e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i++ s rqvtfskRr+g++KKA+EL vLCda+va+++fss+gkl+++ss 678431200 9 KKIDDPSIRQVTFSKRRKGLFKKAQELAVLCDADVALVVFSSSGKLFDFSS 59 6899*********************************************96 PP | |||||||
2 | K-box | 45.7 | 2.8e-16 | 119 | 196 | 21 | 98 |
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++L ke+ + ++ +R++ e+L Lsl eLq+Le+ Le +l+++ +kK+ ++++ie+lq+k k+l+++n++L+++l 678431200 119 CSRLSKEVAEKRHLIRRMRAEELLGLSLDELQHLESSLEAGLRRVTEKKEGRMMKEIEQLQEKGKRLRQDNRRLKQQL 196 57889999999999*************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.679 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.0E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.27E-27 | 3 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.63E-34 | 3 | 70 | No hit | No description |
PRINTS | PR00404 | 9.6E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.946 | 112 | 202 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.9E-13 | 119 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSKKKIEMKK IDDPSIRQVT FSKRRKGLFK KAQELAVLCD ADVALVVFSS SGKLFDFSSS 60 RSVKDLLERH DLQLKNIEEM EQPSLETQVP PDHYTSWPHF GFQFIPIYEL ELGVQYSSCS 120 RLSKEVAEKR HLIRRMRAEE LLGLSLDELQ HLESSLEAGL RRVTEKKEGR MMKEIEQLQE 180 KGKRLRQDNR RLKQQLLDCG GAGSSSMISA APIQGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-17 | 1 | 68 | 1 | 68 | MEF2 CHIMERA |
6byy_B | 5e-17 | 1 | 68 | 1 | 68 | MEF2 CHIMERA |
6byy_C | 5e-17 | 1 | 68 | 1 | 68 | MEF2 CHIMERA |
6byy_D | 5e-17 | 1 | 68 | 1 | 68 | MEF2 CHIMERA |
6bz1_A | 4e-17 | 1 | 68 | 1 | 68 | MEF2 CHIMERA |
6bz1_B | 4e-17 | 1 | 68 | 1 | 68 | MEF2 CHIMERA |
6bz1_C | 4e-17 | 1 | 68 | 1 | 68 | MEF2 CHIMERA |
6bz1_D | 4e-17 | 1 | 68 | 1 | 68 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678431200 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097479.1 | 2e-69 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 3e-63 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A068U051 | 1e-67 | A0A068U051_COFCA; Uncharacterized protein | ||||
STRING | XP_009783886.1 | 1e-64 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.2 | 1e-40 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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