PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678430839
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 469aa    MW: 52871.8 Da    PI: 6.7079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678430839genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-51111401129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                +ppGfrFhPt+eel+++yL+kkv+g+k++l +vi++vd++k+ePwd++   k+ +  +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s   
  678430839  11 VPPGFRFHPTEEELLQYYLRKKVAGDKIDL-NVIHDVDLNKLEPWDIQDkcKIGSaPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYS-CF 108
                69****************************.99**************952333333556**************************************.99 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                + +g++ktLvfy grap+g+ktdW+mheyrle
  678430839 109 TRIGMRKTLVFYGGRAPHGQKTDWIMHEYRLE 140
                99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-578171IPR003441NAC domain
PROSITE profilePS5100556.07411171IPR003441NAC domain
PfamPF023656.8E-2812139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDLSLNGHSN VPPGFRFHPT EEELLQYYLR KKVAGDKIDL NVIHDVDLNK LEPWDIQDKC  60
KIGSAPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKVIYSCFTR IGMRKTLVFY  120
GGRAPHGQKT DWIMHEYRLE DNKAHESSNA SNAMGDFGSE EGWVVCRVFK KKNHHKGAES  180
TSSSPSTLPR NDSVIDQLLM YMERSSYCSP EKDVKMHFST NQPMQLPGLE AQPLTNPSYA  240
QPEIKPSADW AALDRLVAFQ LNGQPCRHQN LIFSCGEQED DAQLITIQQC GEDEDDRGES  300
DLWNFARSSG SASDPLCHLS VYFAEAPLAC KEKVEEILGY MLTLQGQDEL KLDLQLSSSF  360
FLDSLSFYML TLLVFNRSLI AVAPHVVTSG AITGFETLCL DVVLRNIQHQ HGTSPSLLNS  420
TALNVVVVAV RCLRKSAQQR STAIVYTRCF HIQSQNTVYP LQCSYQFKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-491017414171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00016PBMTransfer from AT1G32770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678430839
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070696.11e-136NAC domain-containing protein 43
SwissprotQ9LPI71e-107NAC12_ARATH; NAC domain-containing protein 12
TrEMBLA0A2G9GSV01e-129A0A2G9GSV0_9LAMI; Uncharacterized protein
STRINGXP_008346654.11e-117(Malus domestica)
STRINGPGSC0003DMT4000293211e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.12e-99NAC domain containing protein 12
Publications ? help Back to Top
  1. Zhao Q, et al.
    Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.
    Phytochemistry, 2015. 112: p. 170-8
    [PMID:25107662]
  2. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Huang J,Chen F,Wu S,Li J,Xu W
    Cotton GhMYB7 is predominantly expressed in developing fibers and regulates secondary cell wall biosynthesis in transgenic Arabidopsis.
    Sci China Life Sci, 2016. 59(2): p. 194-205
    [PMID:26803299]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]