PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678429852
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 312aa    MW: 35064.2 Da    PI: 5.0573
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678429852genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.3e-20107156255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  ++ a+ kl+g
  678429852 107 KFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAAMVYDTAAIKLRG 156
                89*******.**********84....34*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-30106163IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21107164IPR016177DNA-binding domain
CDDcd000189.69E-32107163No hitNo description
PROSITE profilePS5103223.841107164IPR001471AP2/ERF domain
PfamPF008471.0E-12107156IPR001471AP2/ERF domain
SMARTSM003804.5E-38107170IPR001471AP2/ERF domain
PRINTSPR003673.2E-10108119IPR001471AP2/ERF domain
PRINTSPR003673.2E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGDQLVWPVK YTEHKNVTSA LLKRKKGDRD RGCAPRTVKF SVTDPDATDS SGDDEVEILP  60
RRRIKKFVNE VRFQVDSADA AVSPKLKKIK GKVKTEEEPL DREIRRKFRG VRQRPWGKWA  120
AEIRDPSRRV RLWLGTYDTA EEAAMVYDTA AIKLRGPDAL TNFVPPRVKA TVADSNDASV  180
SSYDSAGELN TFSSPTSVFR YASDQDSEPS AAIKTREPAA PLPNDDDPNS LIPPMAAADY  240
SGVLTAAENN YYNFPVEEEP FFNEMCNYLD HRLPDSSTAI EDVKYSVQEL SSWLQIDDYF  300
HEAPSVGCLM RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19106168466ATERF1
3gcc_A1e-19106168466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678429852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076033.13e-71ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE33e-52CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A2J6K0778e-66A0A2J6K077_LACSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-54cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]