PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678428438 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23604.1 Da PI: 9.1942 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.6 | 2.2e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss 678428438 10 RIENASSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 66.5 | 9.2e-23 | 77 | 169 | 6 | 97 |
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ +e+ ++l++++a ++ie L+ +qR+llG++++s+s++eLq++ +qLe sl+kiRs+K +++ +qi +lq+kek l + n+aL+ + 678428438 77 TTGpEAEERIQQLKHDAAICAQKIELLEASQRKLLGQEVGSCSMEELQEIDNQLEISLNKIRSRKAQMFNDQIAKLQEKEKLLLQVNQALSFR 169 3334788899*******************************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.744 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.03E-40 | 2 | 72 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.06E-31 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.6E-23 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.626 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009838 | Biological Process | abscission | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0080187 | Biological Process | floral organ senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MARGKVQLRR IENASSRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSQ KGRLYEFSSS 60 SVQKLIQKYL EHRKEQTTGP EAEERIQQLK HDAAICAQKI ELLEASQRKL LGQEVGSCSM 120 EELQEIDNQL EISLNKIRSR KAQMFNDQIA KLQEKEKLLL QVNQALSFRL QNEYKHVEAG 180 SWCHSTQNLE VVTELFIGLG VPTTKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-22 | 1 | 72 | 1 | 72 | MEF2C |
5f28_B | 4e-22 | 1 | 72 | 1 | 72 | MEF2C |
5f28_C | 4e-22 | 1 | 72 | 1 | 72 | MEF2C |
5f28_D | 4e-22 | 1 | 72 | 1 | 72 | MEF2C |
6byy_A | 5e-22 | 1 | 91 | 1 | 93 | MEF2 CHIMERA |
6byy_B | 5e-22 | 1 | 91 | 1 | 93 | MEF2 CHIMERA |
6byy_C | 5e-22 | 1 | 91 | 1 | 93 | MEF2 CHIMERA |
6byy_D | 5e-22 | 1 | 91 | 1 | 93 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00576 | DAP | Transfer from AT5G62165 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678428438 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076262.1 | 3e-90 | MADS-box protein AGL42 | ||||
Refseq | XP_011076263.1 | 3e-90 | MADS-box protein AGL42 | ||||
Refseq | XP_020548859.1 | 3e-90 | MADS-box protein AGL42 | ||||
Swissprot | Q9FIS1 | 6e-68 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | S8CQ92 | 5e-92 | S8CQ92_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F00397.1.p | 4e-82 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 9e-66 | AGAMOUS-like 20 |