PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678428234

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 329aa MW: 37934.7 Da PI: 8.235

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678428234	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.9	3.1e-56	7	133	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +ppGfrFhPtdeelv++yL++kv+ ++l++ +vik+vd+yk+ePwdL+ ++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k+ l+ 678428234 7 VPPGFRFHPTDEELVDHYLRRKVSCRQLDI-DVIKDVDLYKIEPWDLQGIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-KHDLI 104 69**************************.99**********955556778***********************************.8899 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g++ktLvfy+grap+g+k+dW+mheyrle 678428234 105 GMRKTLVFYRGRAPNGQKSDWIMHEYRLE 133 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-62	5	155	IPR003441	NAC domain
PROSITE profile	PS51005	59.369	7	155	IPR003441	NAC domain
Pfam	PF02365	7.3E-29	8	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MNALSQVPPG FRFHPTDEEL VDHYLRRKVS CRQLDIDVIK DVDLYKIEPW DLQGIGTEEQ 60 NEWYFFSHKD KKYPTGTRTN RATAAGFWKA TGRDKAIYSK HDLIGMRKTL VFYRGRAPNG 120 QKSDWIMHEY RLEADEKRAP QASEEGWVVC RVFKKRTAAM RKCSEHDSPL WYDDHVFFMD 180 SPRQTSQTNA VYHSISYKGE LDSLQQYSGN ANGLELDHFI QLPLLENPKM RTPPGVNCTS 240 VPCMEMISAT SSRFRVITSV STKNKDWRVL DKFVASQLSH DHVAKGNEVF DVVNELNLVH 300 GNMKNQQVSM DTASTSSSFH QVHHLWKSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-52	7	161	20	174	NAC domain-containing protein 19
3swm_B	2e-52	7	161	20	174	NAC domain-containing protein 19
3swm_C	2e-52	7	161	20	174	NAC domain-containing protein 19
3swm_D	2e-52	7	161	20	174	NAC domain-containing protein 19
3swp_A	2e-52	7	161	20	174	NAC domain-containing protein 19
3swp_B	2e-52	7	161	20	174	NAC domain-containing protein 19
3swp_C	2e-52	7	161	20	174	NAC domain-containing protein 19
3swp_D	2e-52	7	161	20	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678428234

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076335.1	1e-141	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-106	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2G9GZR1	1e-139	A0A2G9GZR1_9LAMI; Uncharacterized protein
STRING	EOY22909	1e-137	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	2e-98	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]