PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678427195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 213aa MW: 24915.6 Da PI: 10.0791 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.2e-18 | 41 | 91 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++keql++Le+ F ++++ e++ LA+ lgL+ rq+ vWFqNrRa++k 678427195 41 GMNKEQLRTLERWFMLEKKLLPERKMYLAQALGLPPRQIAVWFQNRRARWK 91 5799**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111.5 | 5.6e-36 | 38 | 127 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kr ++keq+++LE+ F e+kL perK+ la++Lgl prq+avWFqnrRAR+ktkqlEk+ye Lkr+y al++e+++L++++++L++ l 678427195 38 RKRGMNKEQLRTLERWFMLEKKLLPERKMYLAQALGLPPRQIAVWFQNRRARWKTKQLEKEYELLKRRYGALMAEQDALKAQNQRLHAML 127 8999**********************************************************************************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-19 | 27 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.261 | 33 | 93 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.2E-19 | 36 | 97 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.65E-15 | 38 | 94 | No hit | No description |
Pfam | PF00046 | 3.2E-15 | 41 | 91 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-19 | 42 | 100 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.8E-5 | 64 | 73 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.8E-5 | 73 | 89 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-11 | 93 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MADFVRLNHQ GQAKPTVSAS LHPSSVGVTE QLPEDGDRKR GMNKEQLRTL ERWFMLEKKL 60 LPERKMYLAQ ALGLPPRQIA VWFQNRRARW KTKQLEKEYE LLKRRYGALM AEQDALKAQN 120 QRLHAMLLSL RAWQQPKKPI NPKRETEDFC VDSKHTDRMI HQSRGCFQEA MPLQLQLQGA 180 KMDQMDESST FFNNFFSSID VEGGSMLWLD QPN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 93 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678427195 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001296720.1 | 4e-43 | jasmoni isoform 2 | ||||
Refseq | NP_001296723.1 | 8e-44 | jasmoni isoform 1 | ||||
Swissprot | Q8LC03 | 4e-36 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A2G9I5B7 | 9e-43 | A0A2G9I5B7_9LAMI; Uncharacterized protein | ||||
STRING | Solyc05g007180.2.1 | 2e-42 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 3e-38 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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