PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678426187

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 335aa MW: 36134.3 Da PI: 5.5658

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678426187	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.7e-05	235	268	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ L++l+ + +K + a++L +A+eYIk L 678426187 235 LGDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 268 555666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.573	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.68E-5	229	272	No hit	No description
SuperFamily	SSF47459	4.45E-11	229	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-8	233	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAEELGAGGV CGGSWWLNSP RSLCSSGGLS PCSSAVLLDD GKASSRSFLD QDLLSHGDGA 60 ATGMEDSGMK SEIGFSAPTI YADSTAKSYL GQQQTSSAFP GSFESAGSQL SSSSYTFASS 120 LLQNLFDGDS SYMVNQDDYF GNLVMINSAE LPEYPSQLVN FPAMLMPSDH HQVLPESTKA 180 SDHKKFNSQA PPISQNHGEG TPPPRKNSGA NPLPKRQRIE SPSPLPTFKV RKEKLGDRVT 240 ALQQLVSPFG KTDTASVLHE AIEYIKFLHA QVDLLSAPYF KSETSSEPHQ QTVHEVTSQG 300 LRTRGLCLIP VSISYPMATE ATNGLWTPTF ERIFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678426187

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q8GXT3	5e-39	BH123_ARATH; Transcription factor bHLH123

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	4e-41	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]