PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678424976

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HSF

Protein Properties

Length: 447aa MW: 49578.9 Da PI: 5.4603

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678424976	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109	3.5e-34	26	118	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++ ++sws+ ++sfvv+ ef++++LpkyFkhsnf+SFvRQLn+YgF+k++ ++ +eF++++F +g+k+ll++i 678424976 26 FLGKTYDMVDDPATDGVVSWSKGNDSFVVWSVPEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKIDPDR---------QEFANEWFIRGQKHLLKSIY 113 99**************************************************************99.........57************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + 678424976 114 RRKAS 118 976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.3E-54	22	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.2E-35	22	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.5E-32	22	115	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.1E-19	26	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.7E-29	26	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-19	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	65	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-19	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
METGGGGLGV GVVSTGTASS LSWAPFLGKT YDMVDDPATD GVVSWSKGND SFVVWSVPEF 60 SRDLLPKYFK HSNFSSFVRQ LNTYGFRKID PDRQEFANEW FIRGQKHLLK SIYRRKASQV 120 QNPSVSLGIE DGTFGMDEEV EMLKKDKNIL MQELIRLRQQ QQSTDNQLQN VGQRVHLMEN 180 RQKHMMSFLS KAMQKPGFVA QLMQQQNDTN LHISGGNKKR RIPSQNEEIL SKNLSVASLD 240 GQIVKYKPLM NEAAMAMSTQ ILNMSSSSRL ESKYINANGF LIGNGSPHSV SDAGSSSDRM 300 SLVALSEVNS NSLRTEPCSS TGFLNQELVG MLFPETKAQD STHVRAVNLQ KNIEGVEAAY 360 LEHGNIVDGF VDAPVPVASG DLLVDAMIDD VPTLPGIHDV FWEQFLPGNV QPDEQDMEHQ 420 ELEWGKLKSL NTLAEQMRLL ASVSNSG

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

METGGGGLGV GVVSTGTASS LSWAPFLGKT YDMVDDPATD GVVSWSKGND SFVVWSVPEF  60
SRDLLPKYFK HSNFSSFVRQ LNTYGFRKID PDRQEFANEW FIRGQKHLLK SIYRRKASQV  120
QNPSVSLGIE DGTFGMDEEV EMLKKDKNIL MQELIRLRQQ QQSTDNQLQN VGQRVHLMEN  180
RQKHMMSFLS KAMQKPGFVA QLMQQQNDTN LHISGGNKKR RIPSQNEEIL SKNLSVASLD  240
GQIVKYKPLM NEAAMAMSTQ ILNMSSSSRL ESKYINANGF LIGNGSPHSV SDAGSSSDRM  300
SLVALSEVNS NSLRTEPCSS TGFLNQELVG MLFPETKAQD STHVRAVNLQ KNIEGVEAAY  360
LEHGNIVDGF VDAPVPVASG DLLVDAMIDD VPTLPGIHDV FWEQFLPGNV QPDEQDMEHQ  420
ELEWGKLKSL NTLAEQMRLL ASVSNSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	6	115	1	129	Heat shock factor protein 1
5d5v_B	2e-23	6	115	1	129	Heat shock factor protein 1
5d5v_D	2e-23	6	115	1	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678424976

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084620.1	1e-157	heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-126	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2G9I194	1e-176	A0A2G9I194_9LAMI; Heat shock transcription factor
STRING	Migut.F00088.1.p	1e-152	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5054	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-117	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]