PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678424937 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 919aa MW: 104376 Da PI: 5.9956 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9.1e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l 678424937 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.9 | 1.5e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l 678424937 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.5E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 7.83E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 6.83E-21 | 33 | 107 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.77E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.5E-55 | 405 | 648 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 919 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGINVRHR RKKRRGIDYN AEIPFEKRPP PGFYDVTDED RPAERIKFPT 240 TIEELEGERR VDKESRLRKQ DIARNKIAQR QDAPSAILQA NKLNDPEAVR RKSKLNLPAP 300 QIPDHELEAI AKMGIASNIN SEELTEGNAA TRALLATYAE TPHPGMTPLR TPQRTPARTH 360 DAIMMEAENQ RRLTLSQTPL LGGDNPMLHP SDFSGVTPRK KEIATPNPLL TPSSTPGGAG 420 LTPRVGMTPL RDGYFGATPR GTPMRDELRI NESLDMVGSG LSRQSDLRKG VVSGLKNLPE 480 PTNEYQFVIQ PLPEENEEEP EEKIEEDMSD RIAREKAEEE ARQQALLKKR SKVLQRELPR 540 PPPASVELIR SSLMRADEDK SSFVPPTLIE QAEELIRKEL LSLLEHDNAK YPLDEKSSKD 600 KKKKRHDNGA VIPSIDDFEE SELKEADHLI TKDAEYIRSS MGHDDESLAE YMEAHQTCVI 660 DMMYFPTRDG YGLSSVANNV EKLTALQGEY ENVKKKIDDE YKKAQKHEQK LKVLTNGYHV 720 RAGKLWTQIE GTFKQMDIAG TELDCFRALQ RQEQLAARHR ISNLWEEVQK QKDLEGNLQK 780 RYGSMVLEFE RLKNHVDGHR QHAEKETNTV TEDVTIQAPE DDVLEKNHPI TMESKAEGPP 840 AVGLTSESPQ EIDAMEGQLM NQTLPGETAA NAEVAVEMDC QLIPDGKLRE DDKHPAASPH 900 ANLSQAELMG EEARQMMDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 794 | 3 | 800 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGINVRHRRKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678424937 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084262.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A022R2T8 | 0.0 | A0A022R2T8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01544.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6139 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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