PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678424831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | CPP | ||||||||
Protein Properties | Length: 500aa MW: 55617.6 Da PI: 7.9944 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 39.5 | 1.1e-12 | 126 | 163 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +kk+C+Ck+s+C+k+YCeCfa+g +C+e C+C +C+Nk 678424831 126 KKKKCSCKNSRCVKLYCECFASGIYCDE-CNCINCCNKI 163 79*************************9.********96 PP | |||||||
2 | TCR | 49.2 | 1e-15 | 198 | 236 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +++gCnCkk++ClkkYCeC++a++ Cse+CkC +CkN e 678424831 198 HNRGCNCKKTSCLKKYCECYQANTLCSEKCKCVGCKNYE 236 899**********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 9.5E-13 | 125 | 165 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 33.28 | 126 | 237 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.4E-9 | 127 | 162 | IPR005172 | CRC domain |
SMART | SM01114 | 3.8E-16 | 197 | 238 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.6E-11 | 200 | 235 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MQQSESPAAA STVVRQLDFA TNLNPMILPG HPQAQLELKL RVLAQSPPRM AAMPHWETVM 60 RPKSPKKEMI LVTKPLESAA AVAELSLPVE PGFLHYSALQ RPLVSKKTTE IHQRSNPEHA 120 YVTPNKKKKC SCKNSRCVKL YCECFASGIY CDECNCINCC NKIEFDECRR DAIRTTLERK 180 PDAFKSKMAS SPDHAVEHNR GCNCKKTSCL KKYCECYQAN TLCSEKCKCV GCKNYEGSEE 240 NILHQAYSIA FQQPRTVAFN DAFGSPHKKI NTLEFGFSDS IHRQGSIHLP HLDQNATFSM 300 SDISYAPVSK RICKPAAQHP KHSYRSMLSG ILQEEHIQNL CTTMINATAQ PPKCLSDKKN 360 GVDPGVVEVT ACSSREDKED ENKNSIAISS NQSDPPVVPD RMPLSPETQA LICDEQARTF 420 MRLEAPSTTQ ESAKSATEIQ PSESAYIEQE RLVLTHFCNF LNTIITRGSI RGDQSILPPH 480 VTSQASILLP LYLLTGGRIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-23 | 127 | 246 | 11 | 134 | Protein lin-54 homolog |
5fd3_B | 3e-23 | 127 | 246 | 11 | 134 | Protein lin-54 homolog |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678424831 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 6e-62 | Tesmin/TSO1-like CXC domain-containing protein |