PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678424356

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 590aa MW: 65364.1 Da PI: 5.8888

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678424356	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	424.5	8.5e-130	200	567	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lv++L++cAeav+ ++++la+ l++++ la +++ +m+++a+yf+eALa++++r y+ +++ s+ + + + f+e++P+lkfsh+taNq 678424356 200 LVHTLMACAEAVQLENFNLAKPLVKNIGLLAISQAGAMRKVATYFAEALARKIYR----PYHMNDHRPD----SAFTDMLQMHFYETCPCLKFSHFTANQ 291 689**************************************************....4443344443....3444445556************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 aIlea++g+++vH+iDf+++qG+QWpaLlqaLasR++gpp++R+Tg+g+p+ ++++ l+e+g rLa+fA++++v+fe++ +vak+l+dle +L+++ +E 678424356 292 AILEAFAGKNHVHVIDFSMKQGMQWPALLQALASREGGPPTFRLTGIGPPSLDETDYLQEVGFRLAEFAKTVNVQFEYRGFVAKSLADLEAAMLDIRDDE 391 ************************************************************************************************ PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres......eerikvErellgrei 294 ++aVn++++lh+ll++++++++ vL+l+++++P++++v+eqea+hns Fl rf+eal+yys+lfdsle+ + s ++++ + +++lg++i 678424356 392 TVAVNSIFELHQLLAKPGAIDK----VLRLIREVKPEILTVAEQEANHNSYFFLGRFTEALQYYSTLFDSLETCDGDGSadaavtRKNKIMTEAYLGQQI 487 **********99999999....*****************************************998444443344556666677777* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nvvaceg +r+erhe l +Wr+r+++aG++pv+l+++++ +a +ll+ +++dgy+vee++g+l+lgW++r+L+++SaW+ 678424356 488 FNVVACEGVDRIERHEPLTQWRNRFNSAGLEPVHLGSNVYRDAITLLAFYGGDGYTVEENHGCLMLGWHTRALLATSAWT 567 *****************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	1.2E-25	38	113	No hit	No description
Pfam	PF12041	9.9E-25	38	106	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	63.343	174	547	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-127	200	567	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MKRENLDHGD YFLSSASSCS MDKGKMRQCE VEEAGVDDEL FGVLGYKVKS SDMAAVAHKI 60 HQIEVAMGNA AVDGYSQLPA MDRTLHYNPS DLSSWLESML SGLNSLPGFD SSLDHFLPTS 120 TGGLAAVDLD FGSDLIAIPG KAVFANAQFH RTSPETRNQH QPPAKKAKTS PCVQDSAPPP 180 ELPQAPRSVL MDTQENGIRL VHTLMACAEA VQLENFNLAK PLVKNIGLLA ISQAGAMRKV 240 ATYFAEALAR KIYRPYHMND HRPDSAFTDM LQMHFYETCP CLKFSHFTAN QAILEAFAGK 300 NHVHVIDFSM KQGMQWPALL QALASREGGP PTFRLTGIGP PSLDETDYLQ EVGFRLAEFA 360 KTVNVQFEYR GFVAKSLADL EAAMLDIRDD ETVAVNSIFE LHQLLAKPGA IDKVLRLIRE 420 VKPEILTVAE QEANHNSYFF LGRFTEALQY YSTLFDSLET CDGDGSADAA VTRKNKIMTE 480 AYLGQQIFNV VACEGVDRIE RHEPLTQWRN RFNSAGLEPV HLGSNVYRDA ITLLAFYGGD 540 GYTVEENHGC LMLGWHTRAL LATSAWTMNG GYSERRNSRI SPNRLRAPEI

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MKRENLDHGD YFLSSASSCS MDKGKMRQCE VEEAGVDDEL FGVLGYKVKS SDMAAVAHKI  60
HQIEVAMGNA AVDGYSQLPA MDRTLHYNPS DLSSWLESML SGLNSLPGFD SSLDHFLPTS  120
TGGLAAVDLD FGSDLIAIPG KAVFANAQFH RTSPETRNQH QPPAKKAKTS PCVQDSAPPP  180
ELPQAPRSVL MDTQENGIRL VHTLMACAEA VQLENFNLAK PLVKNIGLLA ISQAGAMRKV  240
ATYFAEALAR KIYRPYHMND HRPDSAFTDM LQMHFYETCP CLKFSHFTAN QAILEAFAGK  300
NHVHVIDFSM KQGMQWPALL QALASREGGP PTFRLTGIGP PSLDETDYLQ EVGFRLAEFA  360
KTVNVQFEYR GFVAKSLADL EAAMLDIRDD ETVAVNSIFE LHQLLAKPGA IDKVLRLIRE  420
VKPEILTVAE QEANHNSYFF LGRFTEALQY YSTLFDSLET CDGDGSADAA VTRKNKIMTE  480
AYLGQQIFNV VACEGVDRIE RHEPLTQWRN RFNSAGLEPV HLGSNVYRDA ITLLAFYGGD  540
GYTVEENHGC LMLGWHTRAL LATSAWTMNG GYSERRNSRI SPNRLRAPEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-64	195	567	13	378	Protein SCARECROW
5b3h_D	5e-64	195	567	13	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678424356

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070609.1	0.0	DELLA protein GAI1
Swissprot	Q8S4W7	0.0	GAI1_VITVI; DELLA protein GAI1
TrEMBL	A0A2G9HQV2	0.0	A0A2G9HQV2_9LAMI; Uncharacterized protein
STRING	Migut.E00445.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2126	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	0.0	GRAS family protein