PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678423765

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

CPP

Protein Properties

Length: 693aa MW: 75442.8 Da PI: 6.7747

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678423765	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	32	2.5e-10	472	493	1	22
TCR 1 kekkgCnCkkskClkkYCeCfa 22 ++k+gCnCk+s ClkkYCeC++ 678423765 472 RHKRGCNCKRSGCLKKYCECYQ 493 589******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	9.145	438	515	IPR005172	CRC domain
SMART	SM01114	1.7E-8	472	542	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-6	474	493	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MEDSDARSPT SMAKNAGRLT SLVCLDHPPS SSVSPAAWAS GGPSNESSNK YAKYNSITTA 60 ALSFLLFLSR SSYLFHPHLY LPNMASSSTL EALGSPQRIS NGVGAVDVED SPVFSFLNNL 120 SPIKPIRSTH IHHHQTINLL SFASLPSVFN SPHVGNSLRD SRCIPRQPSS RTDISSPDEG 180 GGEKENVDPR AALEALFAVS KHEINNSQCN NFSQKSPSII PDVEEGYEIS KGGALGDAQS 240 SIFDGQSLVL TPEAQSEVLA CKKRLAEFQD VNPCSSAADP DPFATMENEV SVSHICNLLQ 300 QLSVFYGGMR RCLVFEPTVS HLEDTRDSGF DSSMFPQPLG NSNHQLPVKR QSHSPLLHQL 360 LPAIGLHLNA LAASASERLR IGNDSSSTSS FVSPNPELMH NTYDYSCFGR EFATFDPPLR 420 DPFEELGIMI GGFAQTSSPK AKRMKIENPG GAESCKRFIL QDDLGKTPAS ARHKRGCNCK 480 RSGCLKKYCE CYQVPFLSPL CFHVIYVNGC WKLMEKAFLQ LQSGVGCSSN CRCEGCRNAF 540 GMKDDGKWCT VKESEDGNGM DMTDKELLSS SSFTSSVTAL HGDHVFSTAR YYHVYTHSPV 600 SLTIHAQDSS LCTFRPPGSS FFPAIGGSSS EWHSPADKSF LLPPFFQEGL PLGETTKTSS 660 PNGKRVSPPE MKSSGRRLKL ESICSFPPLF VDQ

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MEDSDARSPT SMAKNAGRLT SLVCLDHPPS SSVSPAAWAS GGPSNESSNK YAKYNSITTA  60
ALSFLLFLSR SSYLFHPHLY LPNMASSSTL EALGSPQRIS NGVGAVDVED SPVFSFLNNL  120
SPIKPIRSTH IHHHQTINLL SFASLPSVFN SPHVGNSLRD SRCIPRQPSS RTDISSPDEG  180
GGEKENVDPR AALEALFAVS KHEINNSQCN NFSQKSPSII PDVEEGYEIS KGGALGDAQS  240
SIFDGQSLVL TPEAQSEVLA CKKRLAEFQD VNPCSSAADP DPFATMENEV SVSHICNLLQ  300
QLSVFYGGMR RCLVFEPTVS HLEDTRDSGF DSSMFPQPLG NSNHQLPVKR QSHSPLLHQL  360
LPAIGLHLNA LAASASERLR IGNDSSSTSS FVSPNPELMH NTYDYSCFGR EFATFDPPLR  420
DPFEELGIMI GGFAQTSSPK AKRMKIENPG GAESCKRFIL QDDLGKTPAS ARHKRGCNCK  480
RSGCLKKYCE CYQVPFLSPL CFHVIYVNGC WKLMEKAFLQ LQSGVGCSSN CRCEGCRNAF  540
GMKDDGKWCT VKESEDGNGM DMTDKELLSS SSFTSSVTAL HGDHVFSTAR YYHVYTHSPV  600
SLTIHAQDSS LCTFRPPGSS FFPAIGGSSS EWHSPADKSF LLPPFFQEGL PLGETTKTSS  660
PNGKRVSPPE MKSSGRRLKL ESICSFPPLF VDQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678423765

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-26	Tesmin/TSO1-like CXC domain-containing protein