PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678423707 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 235aa MW: 25906.9 Da PI: 6.5074 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F ++ L H++ H 678423707 80 FSCNYCGRKFYSSQALGGHQNAH 102 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.23E-7 | 77 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 78 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.383 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSPNVIIESE DESEVSSQVL SSNASAQEES KALEDSSNHK QGATHTVKLD LTLGMTMPEA 60 ETGEDSTSTG DHPARPSRVF SCNYCGRKFY SSQALGGHQN AHKRERSIAK RAMRFGMISE 120 RYPSVPSLPI HGVPFRSLGI DAHGSVHQPV FQTYEGPNMH WIRKEAGLPE RHGYIGVPQY 180 MECDDYKLLW PGSFRQVGDL PENLSLNSHH ASYIAMVSTT SPTPPSSIPD LNLKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678423707 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355049.1 | 1e-64 | PREDICTED: zinc finger protein 4-like | ||||
Refseq | XP_015167649.1 | 1e-64 | PREDICTED: zinc finger protein 4-like | ||||
Refseq | XP_015167650.1 | 1e-64 | PREDICTED: zinc finger protein 4-like | ||||
Refseq | XP_015167651.1 | 1e-64 | PREDICTED: zinc finger protein 4-like | ||||
Swissprot | Q39263 | 1e-33 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A2G9H1Y7 | 3e-67 | A0A2G9H1Y7_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400075898 | 5e-64 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 1e-34 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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