PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678423460
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 225aa    MW: 24393.2 Da    PI: 8.6999
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678423460genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18117151135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs C+tt TplWR gp g+k+LCnaCG++y kk++
  678423460 117 CSDCHTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 151
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.43E-12111151No hitNo description
PROSITE profilePS5011412.374111146IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-14111161IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-15116151IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.39E-11116172No hitNo description
PROSITE patternPS003440117142IPR000679Zinc finger, GATA-type
PfamPF003207.0E-16117151IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSPDGCFES ADSCCMPFFA WRPEYGRLSA SPSCKDALVP KLCRVCAVAG QGGCLKTTSE  60
AALNGAPEMA TRTTEVVIQL TALGLLCGME SEADDLDRKD EMKAETDGKA KHILKSCSDC  120
HTTRTPLWRG GPAGPKSLCN ACGIKYNKKR RQLLGLETAR GSRKKKRPTS NRSEEVSEIL  180
KMRFSGFGSD VVLQRYGKLL GKLREEERAA LLLMSLSCCR AAVCG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148166KRRQLLGLETARGSRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678423460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079598.15e-56GATA transcription factor 15
TrEMBLA0A2G9G6U25e-55A0A2G9G6U2_9LAMI; Uncharacterized protein
STRINGMigut.D00108.1.p2e-54(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-22GATA transcription factor 15