PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678423331

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bZIP

Protein Properties

Length: 292aa MW: 32230.9 Da PI: 6.8133

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678423331	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.6e-10	116	170	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + + l 678423331 116 KRAKRILANRQSAARSKERKARYIWELERKVQTLQTEATTLSAQLTRFQRDTTGL 170 9*****************************************9999887766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.1E-15	112	176	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.622	114	177	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.6E-8	116	163	No hit	No description
Pfam	PF00170	1.2E-8	116	170	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.54E-10	116	167	No hit	No description
CDD	cd14703	2.25E-22	117	166	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MQSPNFSRGS VRPSHHRRAH SEVSFRLPDV LLDVPSDPFD DEDDMFSSYM DIEKLPQGSG 60 SGVTGQGQHR YSNSVDAVSG PALPEAPGGN TNTASIEAKK AMAPDKLAEL WTLDPKRAKR 120 ILANRQSAAR SKERKARYIW ELERKVQTLQ TEATTLSAQL TRFQRDTTGL SNENTELKLR 180 LQAMEQQAQL RDALNEALKQ DVERLRMATG EMSQNPDSFT MAMQQVSYTQ TPSFFSTNPP 240 GPVYPGIMSS HHLAETTAQQ DPLGRFQGLD IGGGMVKADG SSVSARESRS TF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678423331

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240865.1	1e-110	transcription factor RF2b-like
Swissprot	Q6S4P4	6e-90	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2G9GG82	1e-110	A0A2G9GG82_9LAMI; Uncharacterized protein
STRING	XP_010252066.1	1e-105	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	2e-74	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]