PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678423176
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 449aa    MW: 49942.3 Da    PI: 4.7681
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678423176genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.83.4e-33151052101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d+++++++sws + +sf+v+d+ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++++ll++i 
     678423176  15 FLLKTYEMVDDSATDSIVSWSGSTKSFIVWDPPEFARVLLPSYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDDFVKDHQHLLKNIY 102
                   9********************999*****************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     678423176 103 RRK 105
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-36999IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-5811104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.8E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-2915104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-181538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDGGPSAGGG SPAPFLLKTY EMVDDSATDS IVSWSGSTKS FIVWDPPEFA RVLLPSYFKH  60
NNFSSFIRQL NTYGFRKIDP ERWEFANDDF VKDHQHLLKN IYRRKPIHSH SQPQISIDPE  120
RAAYEEEVDK LTREKRVLEG QVLKFVEQQS ATKGQLENLT RRISSMEQRQ EKLLTYLDKA  180
FLNPDFVAKL ALKLESMDFS VYKKKRRAPQ GENAETAQED PVTEGHCSSR PELVGTSQPD  240
LCNTLRLELL PAASDVNLVS SGMTSSYDDE VTPQWRSESV QKDFHAKAAT GFLSASEIIE  300
LSDNGASFNL NAESPLPGRL GSESSKMHST QTSSLVDGGG SDHLSHLLDL TLASSSLEVT  360
KSKAPVESSQ PREDMLTVAR LDSNASASGD SASSQYDAPN DEPAPVTTTR VNDLFWEQFL  420
TERPGCSENE ESNLSNLTNY NSRMERLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23410417129Heat shock factor protein 1
5d5v_B3e-23410417129Heat shock factor protein 1
5d5v_D3e-23410417129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678423176
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073785.11e-175heat stress transcription factor A-5
TrEMBLA0A4D8YKV41e-173A0A4D8YKV4_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.N00424.1.p1e-150(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94612125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-97HSF family protein