PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678423098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 300aa MW: 33089.4 Da PI: 8.7215 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117 | 7.5e-37 | 17 | 75 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+al+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnv +Ggg++k+kk+ 678423098 17 EAALRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVLIGGGCQKSKKA 75 67899***************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-23 | 19 | 70 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-31 | 19 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.876 | 20 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 22 | 58 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MSDTKNQRKK AADRPQEAAL RCPRCDSPNT KFCYYNNYSL SQPRHFCKTC RRYWTKGGAL 60 RNVLIGGGCQ KSKKAKGSSK LALDSAADVG GLRLFQVIPP VAMDFQLNVP RLGSPFPGLC 120 YQFPSSNPAI PTNPCFSFDP NPEGPSPSVG LGFSFSSSGF KPLEGTNTAG FQEMGSYSRI 180 FDSESHWKLQ QQRLAMLVSG DYDKEIPSIA IPAIEPATSI QRMQPILFRN LEISNMKQHV 240 TLPTTKDDIT AIPPREWFLE HPYATQQQAP ALATNATNPN ANETTNWSTN EGSFEIISGI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678423098 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022842998.1 | 7e-77 | dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A2G9HTB5 | 6e-69 | A0A2G9HTB5_9LAMI; Uncharacterized protein | ||||
STRING | XP_006426240.1 | 8e-69 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5242 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65590.1 | 4e-36 | Dof family protein |