PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678422623
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRF
Protein Properties Length: 572aa    MW: 62316.3 Da    PI: 7.9723
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678422623genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.3e-24240284145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  678422623 240 DPEPGRCRRTDGKKWRCSREAVVDQKYCERHMNRGRHRSRKPVEG 284
                79****************************************985 PP
2QLQ57.83.2e-20174209237
        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                +FT++Q+++L++Q+l+yKy+ +n+P+P++Ll +i+k
  678422623 174 PFTPSQWMELEHQALIYKYITSNVPIPSYLLNPIRK 209
                8*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-10173209IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.2E-15174208IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.563174209IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847240284IPR014977WRC domain
PfamPF088798.7E-21241283IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MGWVSYVTRV SDSIRSSTHC LSHSPTHTAG FSPFLSSLLR LLSVSLQLFF LFDKQNPTDH  60
SHTALDSLFY SPELRAHTPP HHIYPEEMVP LPATTTSASS NAAHGEGGGF GSGFMNPQGE  120
LINERNNSED HIQMLSFSSP NSHTAPPFPY YLHTSNRATG MNYSAGTLSG FKLPFTPSQW  180
MELEHQALIY KYITSNVPIP SYLLNPIRKA FESAGFSTFS SQRSNPLGWG AFQIGFSSSD  240
PEPGRCRRTD GKKWRCSREA VVDQKYCERH MNRGRHRSRK PVEGQSGRAA SGATTITKKP  300
ATPVASTSPA TAMAPGTAST LSLSHPHQHS NLQQQQPDSD THALSNFNRS VPDNDKSYSN  360
CRQQNPFQEF GLVSSDSLVN PLDQSSSLIH CKKFGDSDIV DDQGNKLENH SLRHFMDVWP  420
KDYSDRTQLS ISIPVTVGSD FLHSALSPTS SKLQRSPQEL EMGLCIGTTA ADHHQRQAAS  480
WVPISWEPSI AGPLGEVLHS TPSYSLDMKH NRDNSPHLAA SPTGVLQRGA LVSLSNSSAG  540
SSPRAKSTKT PDGAGLSNGI VPGMMNPSLP TP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678422623
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-34AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074333.21e-166growth-regulating factor 6
TrEMBLA0A1S3XG671e-138A0A1S3XG67_TOBAC; growth-regulating factor 1-like
STRINGPGSC0003DMT4000126661e-139(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.13e-71growth-regulating factor 1