PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678421722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 18818.4 Da PI: 10.0975 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.7e-18 | 17 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr ++ +g+ +AeIrd s + +r++lg+f+t+eeAa a+++a+++l+g 678421722 17 KFVGVRTRP-WGKHAAEIRDSSR---SgRRVWLGTFDTPEEAALAYDQAALSLRG 67 799***999.**********432...35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-28 | 16 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-21 | 17 | 77 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.4E-13 | 17 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.745 | 17 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.66E-27 | 17 | 77 | No hit | No description |
SMART | SM00380 | 2.5E-33 | 17 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-8 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-8 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MAVEKQSPEA YPSERRKFVG VRTRPWGKHA AEIRDSSRSG RRVWLGTFDT PEEAALAYDQ 60 AALSLRGSSV QLNFPVSVVE QSLAKLNYRC AHGVSPARVL KEHHRQVRRT KRSEPRNRVK 120 EEDLIVLEDL GPELLEQLLI QSSVSEWLRF QPLKESQSAA IMKTE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-25 | 6 | 75 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678421722 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085905.1 | 1e-52 | ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 2e-41 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A022S0H9 | 4e-48 | A0A022S0H9_ERYGU; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A4D9AH08 | 4e-48 | A0A4D9AH08_SALSN; Pathogenesis-related proteins transcriptional activator PTI5 | ||||
STRING | Migut.K00940.1.p | 6e-49 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 6e-41 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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