PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678420178 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 189aa MW: 20616.2 Da PI: 8.2504 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00086 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k F ++ L H++ H 678420178 69 FSCNFCRKKFCSSQALGGHQNAH 91 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.17E-6 | 66 | 96 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 67 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.261 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MPMKTQDVDE MAYSKASLPQ ARPDILNDPA TGHEMYGEQP LKLELTLTLG PRCLSEEHHR 60 HPPRPSRVFS CNFCRKKFCS SQALGGHQNA HRRERSLAKT AMRMRILPFR SLGVESHSSL 120 NQTIFHGPGT DCIGRANVSS IHEEPELSWP GSFRRDGGAA DTGGSSSDAN VGGSSPTASS 180 PIPDLNLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678420178 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070525.1 | 4e-33 | zinc finger protein 4 | ||||
Refseq | XP_011070527.1 | 4e-33 | zinc finger protein 4 | ||||
Refseq | XP_011070528.1 | 4e-33 | zinc finger protein 4 | ||||
Refseq | XP_011070529.1 | 4e-33 | zinc finger protein 4 | ||||
Refseq | XP_011070530.1 | 4e-33 | zinc finger protein 4 | ||||
Refseq | XP_011070531.1 | 4e-33 | zinc finger protein 4 | ||||
TrEMBL | A0A068UAD4 | 3e-28 | A0A068UAD4_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400075898 | 9e-28 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 4e-19 | zinc finger protein 4 |