PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678419758 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 99aa MW: 11414 Da PI: 8.049 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.4e-09 | 14 | 47 | 1 | 33 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgk 33 +g+W++eEd +l d ++++G+g +W + +++ gk 678419758 14 KGPWSPEEDAKLRDFIERYGTGgNWIALPQKAGK 47 79************************99999993 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-10 | 5 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.19E-7 | 8 | 46 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.864 | 9 | 49 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 4.7E-7 | 14 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00215 | 16 | 38 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLRDFIE RYGTGGNWIA LPQKAGKQKQ KLSSGFVCSL 60 LTTGWGFFEI VFRIEEMWKE LQTEMAELSE TQHQAWRFQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678419758 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 3e-27 | MYB family protein |