PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678419750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 177aa MW: 19765.4 Da PI: 6.9308 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.7e-09 | 4 | 26 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W+ Ia+ ++ gRt++++k++w++ 678419750 4 RWSIIAAQLP-GRTDNDIKNHWNT 26 6*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.59 | 1 | 32 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 3 | 35 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.18E-8 | 3 | 33 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.48E-6 | 4 | 28 | No hit | No description |
Pfam | PF00249 | 1.7E-6 | 4 | 26 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MKCRWSIIAA QLPGRTDNDI KNHWNTKLKK KLMGMAMAKL PVTTLHGGSP INIPPQFFNF 60 RGPSSFTAFP PRDVEIPGFY FQHQNQTTLQ SYYTWLMKKS CSSSEGSFGF EEMGNGRIGH 120 FQGFAPSPAI DEKAALLDPL SAIFEQKPDY EANLLECDSQ EVIANGSVFD FEGKAYG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678419750 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18298 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-09 | myb domain protein 36 |