PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678418801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 588aa MW: 65244.6 Da PI: 6.3722 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75 | 8.7e-24 | 94 | 196 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvlt sd++++g +++ +k+a+++ +++++ +++l+ d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++el+v+ 678418801 94 FCKVLTASDTSTHGGFSVLRKHANDClppldMSQQTPTQELVSHDLHGIEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RAETGELRVG 191 99*********************999****9555556679************************************************..4599****** PP EE-SS CS B3 96 vfrks 100 v+r+s 678418801 192 VRRHS 196 **985 PP | |||||||
2 | Auxin_resp | 92.6 | 6.6e-31 | 220 | 299 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F v+Y+Pr s+F++ ++k+++a+++++ vGmRfkm fe+eds+err+sGt++gv+d++p + ++SkWr Lk 678418801 220 ASHAVLTHTIFVVYYKPRI--SQFIIGLNKYLEAMSQNFGVGMRFKMPFEGEDSPERRFSGTIIGVEDVSP-SCEGSKWRTLK 299 68999*************8..9*************************************************.9*******996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-41 | 84 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.98E-40 | 85 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.40E-19 | 92 | 194 | No hit | No description |
PROSITE profile | PS50863 | 12.026 | 94 | 196 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-22 | 94 | 196 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-22 | 94 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.6E-28 | 220 | 299 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.2E-7 | 456 | 514 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.857 | 478 | 559 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.32E-13 | 480 | 554 | No hit | No description |
Pfam | PF02309 | 3.9E-6 | 524 | 564 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 588 aa Download sequence Send to blast |
MASRSALTLQ RHAESEVKDT LYEELWKACA GPLVEVPKVG ERVYYFPQGH IEQAEQDTDE 60 VFAQITLMPE VNQSEPTSPD SHPDEPPRPV VHSFCKVLTA SDTSTHGGFS VLRKHANDCL 120 PPLDMSQQTP TQELVSHDLH GIEWRFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDSFVF 180 LRAETGELRV GVRRHSRQQS SMPSSVISSQ SMHLGVLATA SHAVLTHTIF VVYYKPRISQ 240 FIIGLNKYLE AMSQNFGVGM RFKMPFEGED SPERRFSGTI IGVEDVSPSC EGSKWRTLKA 300 TSIARPDRVS PWEIEPFVSS VPPSLNLPSA VKPKRLRSHV DVPALVSSLS KKTDVGNASG 360 DMIIEETEGK SASARSSTTN LSRIPGNSPT SCDNASKKSE SAVGCRLFGI DLNMPSVPSC 420 DEMGKSNAPN IDGEASLARM SSSLHWEQQQ PDASKESHEQ KQDQMQEEVL CRSSSFSRSR 480 TKVQMQGVAV GRAVDLPSLK GYEDLIIELE EMFEIKGELR TRNKWEIVYT DDEGDMMLAG 540 DDPWPEFCSM VRRIFICSSQ DVKKMKSRGF PSSSICDKET TAALVSGD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-147 | 17 | 319 | 15 | 357 | Auxin response factor 1 |
4ldw_A | 1e-147 | 17 | 319 | 15 | 357 | Auxin response factor 1 |
4ldw_B | 1e-147 | 17 | 319 | 15 | 357 | Auxin response factor 1 |
4ldx_A | 1e-147 | 17 | 319 | 15 | 357 | Auxin response factor 1 |
4ldx_B | 1e-147 | 17 | 319 | 15 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678418801 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854189.1 | 0.0 | PREDICTED: auxin response factor 9 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A2G9G9G4 | 0.0 | A0A2G9G9G4_9LAMI; Auxin response factor | ||||
STRING | Migut.A00611.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |