PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678418709 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRF | ||||||||
Protein Properties | Length: 376aa MW: 40820.1 Da PI: 8.0447 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.7 | 2.3e-24 | 103 | 147 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ 678418709 103 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 147 79****************************************986 PP | |||||||
2 | QLQ | 64.4 | 2.8e-22 | 25 | 59 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i+ 678418709 25 PFTAGQWQELEHQAMIYKYLVAGLPVPPDLVMPIR 59 9*********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.8E-11 | 24 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.2E-17 | 25 | 59 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.226 | 25 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.831 | 103 | 147 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.1E-21 | 104 | 146 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MSGTASTSLT IGGGRDGGYG GYRPPFTAGQ WQELEHQAMI YKYLVAGLPV PPDLVMPIRH 60 SFDAISARLF HHPSRNHLPT PLLENVITSV VVGYVSYYGK KFDPEPGRCR RTDGKKWRCS 120 KDAHPDSKYC ERHMHRGRNR SRKPVESQST SQSSPAPTAH ISSGPATNTI SFQTSGSGSF 180 QNMPLYSVGG SEGSYGGSIS KLQMENISFG IDNKELRYIP GLASDSDDHT FPLEASSGVG 240 SLGAGFGAGS SSWRLMPSQV SSTSVLKSKA DSLLRNSNSS NQQDLAHAFD PMDSKQRLQH 300 CFLGNDTATG KQEQHPVHPF FSEWPTTKES WSVDVDDGAD KNIFSSTQLS ISIPRGSSDF 360 SSGNAYSQNS DFPNPK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678418709 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553030.1 | 1e-173 | growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_020553031.1 | 1e-173 | growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_020553032.1 | 1e-173 | growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_020553033.1 | 1e-173 | growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_020553034.1 | 1e-173 | growth-regulating factor 4-like isoform X1 | ||||
TrEMBL | A0A1S4AYW5 | 1e-138 | A0A1S4AYW5_TOBAC; growth-regulating factor 4-like isoform X1 | ||||
TrEMBL | A0A1S4AZ62 | 1e-138 | A0A1S4AZ62_TOBAC; growth-regulating factor 4-like isoform X2 | ||||
STRING | XP_009605688.1 | 1e-139 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-40 | growth-regulating factor 5 |