PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678418693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRF | ||||||||
Protein Properties | Length: 407aa MW: 44920.6 Da PI: 8.1719 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.6 | 2.5e-24 | 143 | 187 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ 678418693 143 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 187 79****************************************986 PP | |||||||
2 | QLQ | 64.3 | 3.1e-22 | 25 | 59 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i+ 678418693 25 PFTAGQWQELEHQAMIYKYLVAGLPVPPDLVMPIR 59 9*********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.8E-11 | 24 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.8E-17 | 25 | 59 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.226 | 25 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.831 | 143 | 187 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.9E-21 | 144 | 186 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MSGTATTSLA MGSSQDRGYG GHRPPFTAGQ WQELEHQAMI YKYLVAGLPV PPDLVMPIRH 60 SLDAISSRLL HHPSCKHLLL CENLLTCAYI YSCVLCFLVK HECGVLMYTV ICLCFDYYKM 120 QCIVKFQKTF AVGYVSYYGK KFDPEPGRCR RTDGKKWRCS KDAHPDSKYC ERHMHRGRNR 180 SRKPVESQST SQTLPTAMTH ISSGSATNTI SFQSSGSGNL QRMHLYSAVC SEGSSYAGSL 240 SKLQMDNLPY GIYNKELRCI PGLASETDGC VFPSEASSGA GTNSWRLMPS QVSSPSLLKP 300 KADSLLLSSN STQQNLAHAF DPVGSKQRQQ HSFLGNDSIA GKQEEQPVHP FFNEWPSMKE 360 SWSVDADDGT DKNIFSSTQL SISIPRGSSD FSSGNAYSQT GEFPNSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678418693 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY303170 | 6e-45 | AY303170.1 Solanum bulbocastanum chromosome 8 clone UW3A14, complete sequence. | |||
GenBank | AY303171 | 6e-45 | AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553030.1 | 1e-149 | growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_020553031.1 | 1e-149 | growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_020553032.1 | 1e-149 | growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_020553033.1 | 1e-149 | growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_020553034.1 | 1e-149 | growth-regulating factor 4-like isoform X1 | ||||
TrEMBL | A0A1S4AYW5 | 1e-117 | A0A1S4AYW5_TOBAC; growth-regulating factor 4-like isoform X1 | ||||
STRING | XP_009605688.1 | 1e-118 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-39 | growth-regulating factor 5 |