PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678417114
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 302aa    MW: 34503.7 Da    PI: 10.1517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678417114genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-175095147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
        678417114 50 RGHWKPVEDLKLKELVATYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 95
                     899*****************************.***********996 PP
2Myb_DNA-binding53.74.6e-17102146147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T +E+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ +
        678417114 102 RRAFTDDEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 146
                      678*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9514596IPR017930Myb domain
SMARTSM007173.3E-144998IPR001005SANT/Myb domain
SuperFamilySSF466892.25E-2750143IPR009057Homeodomain-like
PfamPF002491.1E-165095IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2651103IPR009057Homeodomain-like
CDDcd001671.70E-125394No hitNo description
PROSITE profilePS5129426.58497151IPR017930Myb domain
SMARTSM007175.7E-14101149IPR001005SANT/Myb domain
PfamPF002491.5E-13102145IPR001005SANT/Myb domain
CDDcd001671.84E-10104147No hitNo description
Gene3DG3DSA:1.10.10.604.0E-20104150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAFASNAADS SSTDTSSRRS YVLKRWGLDL NEEAEGLVPQ QQQFSKMCCR GHWKPVEDLK  60
LKELVATYGP QNWNLIAEKL QGRSGKSCRL RWFNQLDPRI NRRAFTDDEE EKLMAAHRLY  120
GNKWAMIARL FPGRTDNAVK NHWHVVMARK YREQQQSSSA NRRRKFGQHY VSDNTSPQRN  180
PVEFWPPPPL AFFPGMPSLI SGPNYHYYPP HRTHVIVIIT GAQYHTWGRS SSLFPETAAE  240
GGGELRVHTQ NQTLSAQHRI LPFNPSGASA PPPPFIDFLG VEVPQNERHG DGGTSRRSRR  300
EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31491506107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678417114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024197655.14e-78transcription factor MYB54-like
TrEMBLA0A2P6R2T61e-76A0A2P6R2T6_ROSCH; Putative transcription factor MYB-HB-like family
STRINGERM945273e-72(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-70myb domain protein 105