PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678416711
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 300aa    MW: 32424.1 Da    PI: 7.3545
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678416711genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.22.3e-3453108458
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                  +rY+eClkNhAa+lGghavDGCgEfmps++++ +++++l+CaACgCHRnFHRre++
    678416711  53 IRYRECLKNHAAALGGHAVDGCGEFMPSPEANpSDPTSLTCAACGCHRNFHRREND 108
                  79******************************9********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.7E-2953107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2253109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-3054106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.98155106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.17E-17178246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28182249IPR009057Homeodomain-like
TIGRFAMsTIGR015654.0E-25187243IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEMGNSTVRE APEGDVAAPT TATGIQSPFG NGVLKIHAPL YHNHNPNHHP VVIRYRECLK  60
NHAAALGGHA VDGCGEFMPS PEANPSDPTS LTCAACGCHR NFHRRENDDP HAPPAALPAL  120
EYQPNHRHHP PPPPPLQMVS SPNNSPSPPP ISSSYFPSAP HMLMALSHGL DGTPPLSAAG  180
SEGLLSRKRF RTKFTQNQKE RMLEFAEKIE WRMQKSEADA INEFCRDIGV EKSVFKVWMH  240
NNKHSFVKKD PALLLNSSSA TTTPLSSATH GGAGDSNDNT HNHLDTGRSQ TLGTNGSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-201872451775ZF-HD homeobox family protein
1wh7_A4e-201862451675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678416711
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022864994.11e-84zinc-finger homeodomain protein 9-like
SwissprotQ9LXG01e-67ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2G9HG833e-90A0A2G9HG83_9LAMI; Uncharacterized protein
STRINGXP_010257380.17e-76(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.14e-58homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]