PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678415853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 919aa MW: 104220 Da PI: 5.8583 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9.1e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l 678415853 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.9 | 1.5e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l 678415853 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.5E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 5.48E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 6.83E-21 | 33 | 107 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.17E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 3.9E-55 | 405 | 649 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 919 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGINVRHR RKKRRGIDYN AEIPFEKRPP PGFYDVTDED RPAERIKFPT 240 TIEELEGERR VDKESRLRKQ DIARNKIAQR QDVPTAILQA NKLNDPEAVR RKSKLNLPAP 300 QIPDNELEAI AKMGIASDII NEELTEGNAA TRALLATYAQ TPQQGMTPLR TPQRTPAGTR 360 DAIMMEAENQ RRMTHSQTPL LGGDNPMLHP SDFSGVTPRK KEIATPNPLL TPSATPGGAG 420 LTPRVGMTPL RDGIFGATPR GTPMRDELHI NEGLDMVGSG ISRQSDLRRG VVSGLKNLPQ 480 PTNEYQFVIQ PLPEENEEEP EEKIEEDMSD RIAREKAEEE ARQQALLKKR SKVLQRELPR 540 PPPASLDLIR SSLMRSDEDK STFVPPTLIE QADELIRKEL LTLLEHDNAK YPLEEKSSKD 600 KKRKRHDNGI PGSVPSIDDF VETELKEAGH LIMKEIDYIR SAMGHDDESS AEYVEAHQTC 660 INDMMYFPTR DGFGLSSVAN NAEKLSALQS EFENVRKKMD DEYKKAQKHE QKLKVLTNGY 720 QVRAGKLWAQ IEGTFKQMDI AGTELECFQA LQRQEQLAAR HRISNLWEEV QKQKELEGNL 780 QKRYGNMVLE FERLKNVIDE HRQHIEKETN AVADVTVQAP EDELLENNHQ ITMESNVDEP 840 QAAGSTSESS GQIDAMNTTQ EQLINEALSG EATNAEDSVE MQCQLEIGGT HMDVDKHPAA 900 TSQDGNSPQD DRSAKVMNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 796 | 3 | 800 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGINVRHRRKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678415853 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084262.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A022R2T8 | 0.0 | A0A022R2T8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01544.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6139 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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