PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678415182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 178aa MW: 20054.9 Da PI: 8.6488 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.7e-05 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H 678415182 44 YTCSFCRREFRSAQALGGHMNVH 66 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.27E-6 | 41 | 70 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.6E-6 | 44 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MEKARIVRGR SGEVGGSLDL FKLKNCWSGP FQEGGMFSWP PRSYTCSFCR REFRSAQALG 60 GHMNVHRRDR ARLRLSPAKD DGELSVLHPK IETLNSNPSF LNSSAFKLNH MSEEGKGVVV 120 EKHHVGELGD GLVKMKGAKG LFLLKKVDLW EDEKDCEGVD QNQELDLELR LGFSSYMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-14 | 39 | 66 | 2 | 29 | superman protein |
2l1o_A | 4e-14 | 39 | 66 | 2 | 29 | Transcriptional regulator SUPERMAN |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678415182 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027164902.1 | 1e-28 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | S8DR03 | 1e-30 | S8DR03_9LAMI; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2110 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 1e-23 | zinc finger protein 11 |