PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678414320
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 388aa    MW: 42006.5 Da    PI: 7.3432
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678414320genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-17145194155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  678414320 145 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 194
                78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-15145202IPR016177DNA-binding domain
PfamPF008474.1E-9145194IPR001471AP2/ERF domain
PROSITE profilePS5103217.306146202IPR001471AP2/ERF domain
CDDcd000184.73E-15146235No hitNo description
Gene3DG3DSA:3.30.730.101.2E-16146202IPR001471AP2/ERF domain
SMARTSM003804.1E-31146208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.100.001207233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MWDLNFEPAG EKGKGVLSGS DSGSSMVVVA DEQQKVFDSS TRRSTNKKSS SKIFGFCVGS  60
EVEEETDQSS NSKSSPVTRN FFPVGPGDPE VVAVGGEAPP DFPRAAHWVG IEFSKGGNNS  120
FPGQSAGVET TRLKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA  180
AARAYDRAAI KFRGVEADIN FCLEDYAEDL KKASAYDKAA IKCNGKEAVT NFDPSIYEEE  240
LRTGGGESSS NNAPDHNLDL SLGNGESLSA SEVDPSCRAA LYQPEQQQLG FSHLPPGHGD  300
MQMAFQLHIN SAGKTAKPPH LVHAPFTLQG YNNIHQQVRN AGGEVGMGQT RILQNPLLAS  360
AAASSGFPLM RRIFLQTNGL QHTVTRPS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678414320
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022843350.15e-67floral homeotic protein APETALA 2-like
SwissprotQ9SK031e-36RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2P5RZ702e-57A0A2P5RZ70_GOSBA; Uncharacterized protein
STRINGLus100415955e-52(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.25e-39related to AP2.7