PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678413640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22958.8 Da PI: 10.1053 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp++ + r++lg+f++aeeAaka++ a+++++g 678413640 31 HFRGVRKRP-WGRFAAEIRDPTK---KSRVWLGTFDSAEEAAKAYDDAARQFRG 80 69*******.**********864...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.31E-21 | 31 | 88 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.58E-31 | 31 | 88 | No hit | No description |
PROSITE profile | PS51032 | 23.341 | 31 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-13 | 31 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-38 | 31 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MITRQAHGLR SNPMASRPKL AAAVSGGGGA HFRGVRKRPW GRFAAEIRDP TKKSRVWLGT 60 FDSAEEAAKA YDDAARQFRG PKAKTNFPPP PSGFEMDRHD CFVDNRSPSN SSEVETAAPD 120 SPLLELTLGS QRQRFPQINS CSETPPPKTP LLHLRAESRQ EIVDMMNRMR CRRLAEAAVE 180 SESDSSSAVA DRPKSPLNLD LNLSPPANP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 29 | 88 | 3 | 63 | ATERF1 |
3gcc_A | 8e-22 | 29 | 88 | 3 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678413640 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553968.1 | 8e-64 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2Z7B914 | 1e-46 | A0A2Z7B914_9LAMI; Ethylene-responsive transcription factor 4-like | ||||
STRING | AES89693 | 2e-39 | (Medicago truncatula) | ||||
STRING | XP_009618542.1 | 2e-39 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 4e-26 | erf domain protein 9 |