PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678413607

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HB-other

Protein Properties

Length: 1582aa MW: 175466 Da PI: 5.5711

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678413607	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	24	80	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR+ t+ qle Le+ +++ +yps+ r+eL++klgLt+rq ++WF+ rR k+kk 678413607 24 RPKRQMKTPFQLEMLEKTYAMGPYPSEVIRAELSAKLGLTDRQLQMWFCHRRLKDKK 80 579****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-17	7	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.25E-17	15	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.503	21	81	IPR001356	Homeobox domain
SMART	SM00389	4.3E-18	23	85	IPR001356	Homeobox domain
Pfam	PF00046	5.8E-16	24	80	IPR001356	Homeobox domain
CDD	cd00086	1.84E-15	24	80	No hit	No description
PROSITE profile	PS50827	14.801	453	512	IPR018501	DDT domain
SMART	SM00571	4.0E-15	453	512	IPR018501	DDT domain
Pfam	PF02791	9.8E-16	455	509	IPR018501	DDT domain
Pfam	PF05066	5.5E-13	635	702	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	8.2E-8	810	853	IPR028942	WHIM1 domain
Pfam	PF15613	9.2E-14	975	1047	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1582 aa Download sequence Send to blast
MMESGSEDEI GKNINQGTPG GSKRPKRQMK TPFQLEMLEK TYAMGPYPSE VIRAELSAKL 60 GLTDRQLQMW FCHRRLKDKK DTMAVDKKET TAVAPTKRKT PLPVGRRRLA EPLVDQQVVA 120 YPESGRGSDS GSSLGSESGS GEFRNDDDTP NIPHRDSPGT FMEHRVIACV EAQLGEPIRQ 180 DGPILGVEFD DLPPGAFGAP IASGELQDGY RLPYDSKLFS PYDPKTYNAA KVAHHDMLEA 240 KIRLGHSNQS YMDDLELGVS CPKHLSLMQE DRSLSLEPAA EGQETCVDAY AARGKQLQFP 300 SASAEDLNAN NGDDLHLARK RKGDETRTGK DVHQANEKKI RKEIEKQDQL RRKAERRKQK 360 EEHRREKEEA RQKAAMERAA AQRIAKESMG LIEDERLELM DLAASRNGLA SIFSMDYDTL 420 ENLDSFRDAL CQFPPRVVQL RKPFAIKPWL DSDKNVGNLL MVWKFCVTFA DVLGLWPFTL 480 DEFLQAFHDN ESRLLGEINI AVLKLIIKDI VDVMRTPSGG PGTNQYTAIN FEGGHPRIVE 540 GGYLWGFDIR NWQKYLNPLT WPEILRQFGL SAGFGPQLKK KAVNHISVNQ MDEAKGCEEV 600 VSTLRSGSAA ENAFAMMQEK GLTLQRKSRH RLTPGTVKFA AYHVLALEGS KGLNVIDLAD 660 KIQKSGLRDL RTSKTPEASI SVALSRDPVL FERVAPSTYC VRPAFRKDPS EAASLISAAK 720 EKIQKYANVL LAGQNADDEE RDDDSDSDVA EGVDFDASPM TASVGKSGGC KDSSSHFSNF 780 EDKLHVDAAR IDTGGLYAPD RGFEIDESIS GEAWVLGLTE GDYSDLSVEE RLNALVALIG 840 IANEGNSTRV ILEERMDASN ALKKQMWAEA QLDKRRMKEE VTVTKFNDSF NAVAEGGISP 900 FIGEDRVYNP SASTSKEDPS VMVESLYAPI ENLPQDVFTG LSVFPGQQNG CMTEKSRLQL 960 KSYIGHIAEE QYAYRSLPLG QDRRRNRYWQ FVASASCLDP GSGRIFVETV DGRWSLLDSV 1020 EAFDALLSSL DTRGIRESHL HTMLKKIEDC FKKYIRIYRR NAPSYHKMSQ QGTSEVDCRL 1080 DEFDGHHGAV CGSSFDALES SCSFRVDTGR NETEVANLLK RNEDLREWMV KGCFNPSVLH 1140 SMAHEVKRCE PLFGICNACH TTYDGTGSVC ASCNQMQTGS LSERFSSDSN LADETGSSML 1200 NSSPLRVRLI KAILTLLEVC VQFRCACISS SLYGILAALF TMAVLQATVP LEALHASWTE 1260 ERRRTWALEM QKSSSIEDLF QVLAQFEGAI RRDHISKDFE TTEELLCHCD PLRVSDSKSI 1320 YFASAGYLPW LPKSSAAVAL RLLELDGSVC YNHVRKDDSV DEKDAKPEGS PKEEGRGHLL 1380 ATPGSFKPRQ MAHGRGGRPN SKLQRRGVSS IASSSRRIVK ASDPSRQTES QRSVKLSGHA 1440 AHGRGRRTVR RRRSENRAIP EFGEKDDAIK TGVPVPRSSA AETRRLAARN ALVENDGSSN 1500 ASDSGDTDEN GNAGTDGAER WDAAGYSFTP NRSRGYDTQI ENGYDDDAEN AEEIKDEGES 1560 MEDEDIGPRN EEDSGVSGDY SD

Sequence ? help Back to Top

Protein Sequence Length: 1582 aa Download sequence Send to blast

MMESGSEDEI GKNINQGTPG GSKRPKRQMK TPFQLEMLEK TYAMGPYPSE VIRAELSAKL  60
GLTDRQLQMW FCHRRLKDKK DTMAVDKKET TAVAPTKRKT PLPVGRRRLA EPLVDQQVVA  120
YPESGRGSDS GSSLGSESGS GEFRNDDDTP NIPHRDSPGT FMEHRVIACV EAQLGEPIRQ  180
DGPILGVEFD DLPPGAFGAP IASGELQDGY RLPYDSKLFS PYDPKTYNAA KVAHHDMLEA  240
KIRLGHSNQS YMDDLELGVS CPKHLSLMQE DRSLSLEPAA EGQETCVDAY AARGKQLQFP  300
SASAEDLNAN NGDDLHLARK RKGDETRTGK DVHQANEKKI RKEIEKQDQL RRKAERRKQK  360
EEHRREKEEA RQKAAMERAA AQRIAKESMG LIEDERLELM DLAASRNGLA SIFSMDYDTL  420
ENLDSFRDAL CQFPPRVVQL RKPFAIKPWL DSDKNVGNLL MVWKFCVTFA DVLGLWPFTL  480
DEFLQAFHDN ESRLLGEINI AVLKLIIKDI VDVMRTPSGG PGTNQYTAIN FEGGHPRIVE  540
GGYLWGFDIR NWQKYLNPLT WPEILRQFGL SAGFGPQLKK KAVNHISVNQ MDEAKGCEEV  600
VSTLRSGSAA ENAFAMMQEK GLTLQRKSRH RLTPGTVKFA AYHVLALEGS KGLNVIDLAD  660
KIQKSGLRDL RTSKTPEASI SVALSRDPVL FERVAPSTYC VRPAFRKDPS EAASLISAAK  720
EKIQKYANVL LAGQNADDEE RDDDSDSDVA EGVDFDASPM TASVGKSGGC KDSSSHFSNF  780
EDKLHVDAAR IDTGGLYAPD RGFEIDESIS GEAWVLGLTE GDYSDLSVEE RLNALVALIG  840
IANEGNSTRV ILEERMDASN ALKKQMWAEA QLDKRRMKEE VTVTKFNDSF NAVAEGGISP  900
FIGEDRVYNP SASTSKEDPS VMVESLYAPI ENLPQDVFTG LSVFPGQQNG CMTEKSRLQL  960
KSYIGHIAEE QYAYRSLPLG QDRRRNRYWQ FVASASCLDP GSGRIFVETV DGRWSLLDSV  1020
EAFDALLSSL DTRGIRESHL HTMLKKIEDC FKKYIRIYRR NAPSYHKMSQ QGTSEVDCRL  1080
DEFDGHHGAV CGSSFDALES SCSFRVDTGR NETEVANLLK RNEDLREWMV KGCFNPSVLH  1140
SMAHEVKRCE PLFGICNACH TTYDGTGSVC ASCNQMQTGS LSERFSSDSN LADETGSSML  1200
NSSPLRVRLI KAILTLLEVC VQFRCACISS SLYGILAALF TMAVLQATVP LEALHASWTE  1260
ERRRTWALEM QKSSSIEDLF QVLAQFEGAI RRDHISKDFE TTEELLCHCD PLRVSDSKSI  1320
YFASAGYLPW LPKSSAAVAL RLLELDGSVC YNHVRKDDSV DEKDAKPEGS PKEEGRGHLL  1380
ATPGSFKPRQ MAHGRGGRPN SKLQRRGVSS IASSSRRIVK ASDPSRQTES QRSVKLSGHA  1440
AHGRGRRTVR RRRSENRAIP EFGEKDDAIK TGVPVPRSSA AETRRLAARN ALVENDGSSN  1500
ASDSGDTDEN GNAGTDGAER WDAAGYSFTP NRSRGYDTQI ENGYDDDAEN AEEIKDEGES  1560
MEDEDIGPRN EEDSGVSGDY SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	80	RRLKDKKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678413607

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096357.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Refseq	XP_011096358.1	0.0	homeobox-DDT domain protein RLT1 isoform X2
TrEMBL	A0A2G9GMV7	0.0	A0A2G9GMV7_9LAMI; Transcription factor PHOX2/ARIX, contains HOX domain
STRING	Migut.M01107.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1