PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678412434
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 726aa    MW: 79356.7 Da    PI: 6.1602
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678412434genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1958113156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  678412434  58 KKRYHRHTQHQIQEMEAFFNECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 113
                678899***********************************************998 PP
2START201.24.5e-632474671206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela +a++el++ a+++ep+W   +    e + ++e++++f+++ +      ++ea+r+s+vv+m+++ lve+l+d++ qW+  +     ka+t ev+s+
  678412434 247 ELAVAAMEELIRVAQSGEPLWIPGPdglsETLCEEEYVRNFPRGIGpkplgLKSEASRESAVVIMNHVSLVEILMDVN-QWSSVFStivsKAATAEVLST 345
                57899*******************99999999***********999********************************.******999*9********** PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      galq+m++e+q++splvp R+  f+Ry++q+ +g+w++vdvSvd+ ++++  +s+ R   +pSg+li++++ng+skvtwvehv++++r +h++
  678412434 346 GvagnhnGALQVMTSEFQVPSPLVPtRENCFIRYCKQHADGTWAVVDVSVDNLRSNS-IPSYRR---RPSGCLIRELPNGYSKVTWVEHVEVDDRGVHSI 441
                ********************************************************9.599988...********************************* PP

                HHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqcek 206
                ++ lv+sgla+gak+wvatl+r+ce+
  678412434 442 YKLLVNSGLAFGAKRWVATLDRLCER 467
                ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-1942115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-2143113IPR009057Homeodomain-like
PROSITE profilePS5007116.58455115IPR001356Homeobox domain
SMARTSM003891.4E-1856119IPR001356Homeobox domain
CDDcd000863.63E-1858116No hitNo description
PfamPF000464.5E-1758113IPR001356Homeobox domain
PROSITE profilePS5084843.005238470IPR002913START domain
SuperFamilySSF559611.1E-34239469No hitNo description
CDDcd088757.15E-123242466No hitNo description
SMARTSM002344.7E-60247467IPR002913START domain
PfamPF018529.0E-53248467IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-7351467IPR023393START-like domain
SuperFamilySSF559616.46E-27486718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MFQPNMFDAH HHLLEMPHKP QENDLDIIRD DEYESKSGTD IMEAPSGDDQ DPNRRSKKKR  60
YHRHTQHQIQ EMEAFFNECP HPDDKQRKEL GRRLGLEPLQ VKFWFQNKRT QMKAQHERHE  120
NSQLRAENEK LRAENIRYKD ALSNATCPNC GGPAAIGEMS FDEQHLRMEN AHLREEIDRI  180
SGIAAKCVGK PMLSYPHLPA GATRSLDLGV SSFGPQTSFT GEIHGAASDL LRPVSRYTEA  240
DKPVIIELAV AAMEELIRVA QSGEPLWIPG PDGLSETLCE EEYVRNFPRG IGPKPLGLKS  300
EASRESAVVI MNHVSLVEIL MDVNQWSSVF STIVSKAATA EVLSTGVAGN HNGALQVMTS  360
EFQVPSPLVP TRENCFIRYC KQHADGTWAV VDVSVDNLRS NSIPSYRRRP SGCLIRELPN  420
GYSKVTWVEH VEVDDRGVHS IYKLLVNSGL AFGAKRWVAT LDRLCERLAS VMANNISPGE  480
IGVISSPEGK KSMLKLAERM VASFCNGVGA STAHTWTTLS GSGADDVRVM TRKSMDDPGR  540
PPGVVLSAAT SFWLPVPPKR VFDSLRDENS RSEWDILSNG GLVQEMAHIA NGRDPGNAVS  600
LLRVNSANSS QSNMLILQES STDSTGSYVV YAPVDIDAMN MVLSGGDPDY VALLPSGFAI  660
LPDGPNGPAG GNPDVGSGGS LLTVAFQILV DSVPTAKLSL GSIATVNNLI KCTVERIKGA  720
VLRDGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259NRRSKKKR
25359RRSKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678412434
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A2G9GCJ20.0A0A2G9GCJ2_9LAMI; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]