PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678411764 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 263aa MW: 30287.6 Da PI: 8.4274 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.7 | 2.7e-54 | 9 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL k++++++++ ++i e+d+++vePw+Lp k+k +e+ewyfF+ +d+ky+tg r nrat++gyWkatgkdk++++ ++ v 678411764 9 LPPGFRFHPTDEELIMHYLSVKAKDSSFRT-TAIGEADLNQVEPWELPWKAKIGEREWYFFCMKDRKYPTGLRVNRATRAGYWKATGKDKKIFQ-GKFFV 106 79*************************999.88***************98999*****************************************.9999* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfykgrap+gekt+Wvmheyrl 678411764 107 GMKKTLVFYKGRAPRGEKTNWVMHEYRL 134 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-60 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.424 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-28 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MERDEVIDLP PGFRFHPTDE ELIMHYLSVK AKDSSFRTTA IGEADLNQVE PWELPWKAKI 60 GEREWYFFCM KDRKYPTGLR VNRATRAGYW KATGKDKKIF QGKFFVGMKK TLVFYKGRAP 120 RGEKTNWVMH EYRLDGMTAM RIQNTSHKNE WVICRIFKKT SGGDKVHISG LVRIPTSGDG 180 SGSSSGTPEL PSLMEMTAEP IGQHVTCFSN EMEEPLHKYS YISPVTKQKD IGYNMYDMKT 240 VFENQELSVI STAPLDLDSL WDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-55 | 7 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-55 | 7 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-55 | 7 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-55 | 7 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-55 | 7 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-55 | 7 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-55 | 7 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-55 | 7 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-55 | 7 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-55 | 7 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-55 | 7 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-55 | 7 | 165 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-55 | 7 | 165 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-55 | 7 | 165 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678411764 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098651.1 | 1e-100 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 3e-97 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A2G9H007 | 1e-101 | A0A2G9H007_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00942.1.p | 4e-99 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 3e-97 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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