PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678411747
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 292aa    MW: 32968.8 Da    PI: 9.6175
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678411747genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-1762107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia++++ gR++k+c++rw++ 
        678411747  62 RGHWKPTEDSKLRELVALYGPQNWNLIAEKLQ-GRSGKSCRLRWYNQ 107
                      899*****************************.************96 PP
2Myb_DNA-binding537.8e-17114158147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eE+ +l +a++ +G++ W++I+r ++ gRt++ +k++w+ +
        678411747 114 RTAFTEEEEVRLMEAHRVYGNK-WALISRFFP-GRTDNAVKNHWHVL 158
                      678*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9757112IPR017930Myb domain
SMARTSM007176.6E-1561110IPR001005SANT/Myb domain
SuperFamilySSF466892.25E-2862155IPR009057Homeodomain-like
PfamPF002496.6E-1762108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2663115IPR009057Homeodomain-like
CDDcd001675.18E-1365106No hitNo description
PROSITE profilePS5129420.442113163IPR017930Myb domain
SMARTSM007173.4E-14113161IPR001005SANT/Myb domain
PfamPF002492.5E-14114158IPR001005SANT/Myb domain
CDDcd001672.29E-10116159No hitNo description
Gene3DG3DSA:1.10.10.601.2E-19116162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVKSLNDMAM GFSVIRGCIM LSSSGSGQAH PDDDEVSRSP PPSPPTSQQR RGSMAVAKFC  60
SRGHWKPTED SKLRELVALY GPQNWNLIAE KLQGRSGKSC RLRWYNQLDP RINRTAFTEE  120
EEVRLMEAHR VYGNKWALIS RFFPGRTDNA VKNHWHVLMA RRFREKSKSN YVRRRSWSNK  180
PDHHVTRPET LRRSAINPNT TGTATTTTIP WLNDDHWSHT ARVASQPLGY DNFILGQYGN  240
WGSGNRCQTA APRATACFSV APSPSTEAAA EDRYEDDESA PQFIDFLGVG ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-33621637108B-MYB
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678411747
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222090.13e-71PREDICTED: transcription factor MYB80
SwissprotQ9SEZ46e-67MY105_ARATH; Transcription factor MYB105
STRINGLPERR01G10360.18e-69(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-67myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]