PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678411720
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 300aa    MW: 33490.7 Da    PI: 8.5439
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678411720genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd  lv +v+++G+g+W+++++t g++R+ k+c++rw +yl
        678411720 14 KGPWAPEEDIMLVSYVQEHGPGNWRAVPNTTGLRRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding47.73.6e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
        678411720  67 RGSFSDHEEKMIVQLQALLGNK-WAAIASYLP-DRTDNDIKNYWNTHL 112
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.131965IPR017930Myb domain
SuperFamilySSF466891.24E-2911108IPR009057Homeodomain-like
SMARTSM007177.6E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001673.98E-91661No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2465117IPR009057Homeodomain-like
SMARTSM007172.7E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.1266116IPR017930Myb domain
PfamPF002491.0E-1367112IPR001005SANT/Myb domain
CDDcd001671.61E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009617Biological Processresponse to bacterium
GO:0009626Biological Processplant-type hypersensitive response
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042761Biological Processvery long-chain fatty acid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWAPE EDIMLVSYVQ EHGPGNWRAV PNTTGLRRCS KSCRLRWTNY  60
LRPGIKRGSF SDHEEKMIVQ LQALLGNKWA AIASYLPDRT DNDIKNYWNT HLKKKLKKLK  120
TDDEPSSATA PPPAQSLSRG QWERRLQTDI KTAKQALEDA LSSENHNTQV CKPLAATSKT  180
TPCYASSTEN ISRLLKQWEK SKALQPQDSR CSSTQNSSNN PTAAMDSSCS GETPTKIKTE  240
KAASADYCAI PHHQSEILRP TCSPVDIKPD PTAFSMLESW LFEDQGKDYF SLDGNATELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-241411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-241411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-251211625128MYB TRANSFORMING PROTEIN
1mse_C2e-25141164105C-Myb DNA-Binding Domain
1msf_C2e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00386DAPTransfer from AT3G28910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678411720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098622.11e-124myb-related protein 306
SwissprotP813924e-98MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A022R2901e-113A0A022R290_ERYGU; Uncharacterized protein
STRINGMigut.H00921.1.p1e-111(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.12e-91myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]