PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678411429
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 315aa    MW: 35974.6 Da    PI: 6.5176
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678411429genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.2e-182572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+++++++G g+W++ +r+ g++Rt+k+c++rw++yl
        678411429 25 RGPWTVEEDFALINYIARHGEGRWNSLSRCAGLKRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding51.32.6e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
        678411429  78 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5892072IPR017930Myb domain
SuperFamilySSF466896.74E-3123119IPR009057Homeodomain-like
SMARTSM007172.4E-152474IPR001005SANT/Myb domain
PfamPF002493.4E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-212679IPR009057Homeodomain-like
CDDcd001672.23E-112772No hitNo description
PROSITE patternPS0017504049IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129423.24673127IPR017930Myb domain
SMARTSM007171.3E-1477125IPR001005SANT/Myb domain
PfamPF002495.3E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2380126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEGMKNCSSE QSEEDSCSRE GELRRGPWTV EEDFALINYI ARHGEGRWNS LSRCAGLKRT  60
GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQKHAKQL KCDVNSKQFK DTMRYLWMPR LVERIQATSG SASASGAAAV NDSTPVMGSS  180
SSSSATSRFS DRSINTNTAS GQTQVFSGYE REAWEISPAA ASDKPEFYNN DSYQVKQENG  240
YQGNQLPYAM TEHQQSMSNS QSGYGYYDQG LEFMDQSSSQ WITGASVAED WYLGDDMWFL  300
QHQEQPTPNP LFSFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252211924120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678411429
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.11e-104PREDICTED: transcription factor MYB108-like
SwissprotQ2QZJ81e-91JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A1J6IUC84e-99A0A1J6IUC8_NICAT; Transcription factor myb108
TrEMBLB9HIK16e-99B9HIK1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10080.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-83myb domain protein 78
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]