PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678411305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 26222.5 Da PI: 6.7831 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.6e-20 | 52 | 104 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F ++++ +e++ +LA++lgL+ rqV vWFqNrRa++k 678411305 52 KRKLSEEQVNMLERSFGCEHKLETERKDRLAAELGLDSRQVAVWFQNRRARWK 104 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.9 | 2.3e-37 | 51 | 141 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+ls+eqv++LE+sF e+kLe+erK +la eLgl+ rqvavWFqnrRAR+k k+lE++y++Lk+++d + e++rLe+e +L+e+l+ 678411305 51 RKRKLSEEQVNMLERSFGCEHKLETERKDRLAAELGLDSRQVAVWFQNRRARWKVKKLEEEYSKLKAEHDVAVVEKCRLESELLKLKEQLD 141 8***************************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.52 | 46 | 106 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-17 | 49 | 110 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-18 | 51 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.25E-14 | 51 | 107 | No hit | No description |
Pfam | PF00046 | 2.3E-17 | 52 | 104 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-20 | 53 | 113 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 77 | 86 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 81 | 104 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 86 | 102 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MNQQEDLDDA MFVSEYRSDG IYPQLPPEQG ASKQPQRRRR KKKSTDDGVM RKRKLSEEQV 60 NMLERSFGCE HKLETERKDR LAAELGLDSR QVAVWFQNRR ARWKVKKLEE EYSKLKAEHD 120 VAVVEKCRLE SELLKLKEQL DVAKMEIQRL SERSSINCNG NSNSPSSSSA FSMEELLFVG 180 MQDMESVYGG GYGQGLAWAP KACGGWVGPS LWSVSYAFHS WSREWDSD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 42 | RRRRKKK |
2 | 36 | 53 | RRRRKKKSTDDGVMRKRK |
3 | 39 | 53 | RKKKSTDDGVMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678411305 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099589.2 | 5e-65 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 2e-56 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2G9G261 | 1e-61 | A0A2G9G261_9LAMI; Transcription factor HEX | ||||
STRING | Solyc02g085630.2.1 | 6e-62 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 4e-40 | homeobox protein 40 |
Publications ? help Back to Top | |||
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