PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678411294
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 526aa    MW: 58626.6 Da    PI: 4.5713
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678411294genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.31.5e-1001715253373
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                ++L++cA+  +s + e+a + ++r+ + +s++gdp++Rl  yf eA+ +r+++++s++ + +   + s+++s+e++ ++k+f++++P+lkfsh+taNq I
  678411294 171 KALTKCARLCDS-NPERAMKSVSRIMNSSSQNGDPLERLSYYFSEAILQRVSGQCSTTRAPMD--DISTETSEEVILSYKAFNDACPYLKFSHFTANQSI 267
                79******8776.999*************************************8888776554..4444569**************************** PP

       GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                lea+e+++++HiiDf+i qGlQW+a+lqa a+Rp g+p  +RiTgv     +s+ +l++tg+rL+ fA+ l+++fef+ +   ++++l   ++   p+E 
  678411294 268 LEATEKSHKIHIIDFGIAQGLQWAAFLQAVATRPTGKPdLVRITGVRT---SSESTLSATGNRLRYFAQLLDLNFEFESV--AEFDQL---RFGAAPDEI 359
                **********************************7777599******9...5899***********************96..445555...677889*** PP

       GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                laVn+++q h+l d   ++     e+Lk+vksl+P +v++ e e+++  +  F+ r+ +al +++a+f+slea+++r+s er ++E+ l+g++i+ vv++
  678411294 360 LAVNFMFQFHNLAD--EKVV----ETLKMVKSLNPCIVTFGEDELNLsPGIGFVSRVKKALTHFAAVFESLEANMSRDSPERLMIEKLLIGQRIRCVVSN 453
                ************93..3334....48*********************7788********************************************99998 PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaW 373
                 ++    r + +e+Wr+++e+ GFkp+ +s++a++qak ll +++ s  y++ ++   g l l W+d pLv++S+W
  678411294 454 DEE----RPQDKESWRSAMESLGFKPLMFSNYAVSQAKILLWNYAySSSYKLMDSslPGFLSLAWNDIPLVTLSSW 525
                765....699999********************************9999***9763357777************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.01143503IPR005202Transcription factor GRAS
PfamPF035145.1E-98171525IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MANMCADSGN LMAIAQQLIQ QKQQQEQQKQ QQEQEQETEQ GLAGGGDHFS WSSAVQHQNQ  60
DGYGELTETF VGGANGDTQE FHYPITSGFR FSDFDSDEWM GSLIDSTETS SNLRAAWQGE  120
MELANLYSHS DLNRVIFSDP SPAPPPPPTE SKSTESTDPS TSSPEGLPIL KALTKCARLC  180
DSNPERAMKS VSRIMNSSSQ NGDPLERLSY YFSEAILQRV SGQCSTTRAP MDDISTETSE  240
EVILSYKAFN DACPYLKFSH FTANQSILEA TEKSHKIHII DFGIAQGLQW AAFLQAVATR  300
PTGKPDLVRI TGVRTSSEST LSATGNRLRY FAQLLDLNFE FESVAEFDQL RFGAAPDEIL  360
AVNFMFQFHN LADEKVVETL KMVKSLNPCI VTFGEDELNL SPGIGFVSRV KKALTHFAAV  420
FESLEANMSR DSPERLMIEK LLIGQRIRCV VSNDEERPQD KESWRSAMES LGFKPLMFSN  480
YAVSQAKILL WNYAYSSSYK LMDSSLPGFL SLAWNDIPLV TLSSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1051685263375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678411294
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099604.11e-174scarecrow-like protein 4
RefseqXP_020554688.11e-174scarecrow-like protein 4
SwissprotA0A024B7I01e-141SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2G9GP691e-168A0A2G9GP69_9LAMI; Uncharacterized protein
TrEMBLA0A2G9I2Z91e-168A0A2G9I2Z9_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000385741e-151(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-123GRAS family protein